[Mon Aug 29 17:35:47 2016] >Input file: TMA6GR87M3G.pdb >TM segments: 46-72_ 85-98 MAIDEN score = 11.5741 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- W61 -C68 2.19133623620364 V57 -L89 2.03173961227779 L58 -I90 1.15515102484378 F60 -I92 1.0854870647191 K54 -V87 0.936303800646729 L51 -E88 0.902539329628429 V57 -I90 0.820060989226999 V56 -I90 0.784764668902536 W61 -I94 0.714579110768646 A62 -I94 0.676776962259874 V57 -G91 0.671599410807413 L58 -L89 0.656851473244564 F60 -I94 0.635266789230482 F60 -A93 0.609666080050982 V56 -L89 0.528895361262346 V55 -V87 0.517662808108152 N59 -L89 0.486808222122447 W61 -G91 0.482049514121465 F60 -D95 0.473328986600911 L51 -V56 0.456700550044893 A62 -P97 0.445070811026426 L58 -I92 0.416945818700647 V57 -V87 0.404890965715474 V55 -L89 0.399000025629814 T63 -E70 0.381351785407809 T63 -S98 0.378110748316973 C68 -G91 0.359351403893276 W61 -D95 0.358771127807501 P67 -P97 0.357976155373527 T63 -I94 0.355604017622653 W64 -D95 0.345550984913172 E71 -G91 0.344317383031864 C65 -D95 0.338299286640106 A62 -S98 0.33671450139824 A62 -D95 0.335086909563226 W61 -I92 0.327150143371759 A62 -S96 0.324185433268221 W61 -P97 0.311131062216 L46 -L51 0.307310955545426 L58 -E88 0.297069315123753 D47 -V55 0.267763517358121 K52 -E88 0.266475407542939 V56 -V87 0.256258121886853 L48 -V56 0.253898081517378 W64 -P97 0.251288126792751 M72 -D95 0.24102339658995 L58 -G91 0.240418735901954 L51 -G91 0.23638398868571 V57 -E88 0.230851046808093 L51 -V87 0.210024495029057 A62 -A93 0.204028107555731 F60 -G91 0.203851592427252 V69 -D95 0.189773410907661 V55 -E88 0.189729138035363 G53 -N86 0.184255133377531 V56 -E88 0.182314057975459 T63 -I90 0.177799942478463 P67 -S96 0.17247003040054 L51 -I90 0.165979275574713 A50 -V57 0.162136659625616 P66 -S98 0.161694761256921 T63 -E71 0.161114124902038 A62 -I92 0.159344823486444 A50 -V87 0.154471284694788 W61 -E71 0.152637291333654 A62 -I90 0.1494960399366 P67 -D95 0.147410628357074 D47 -I90 0.142394991899611 C68 -S96 0.139126315086032 N59 -P67 0.136868224168183 K54 -Q85 0.132558727933119 L48 -I90 0.132188007709311 C68 -S98 0.130331493391519 V69 -A93 0.128543131843036 N59 -E70 0.125282687639914 K54 -L89 0.124769036791236 E71 -I92 0.120253767859376 W64 -S96 0.114843883861371 A62 -L89 0.112782412448082 D47 -K54 0.110128936262523 G49 -E88 0.106075990811135 D47 -L89 0.103250192731907 L46 -V57 0.102536980559568 C65 -S98 0.100336592114678 A62 -E70 0.0993114617221931 P66 -D95 0.0987084455660012 D47 -E88 0.0977837954540111 G53 -L89 0.0964929663970437 V69 -G91 0.0956988809191723 G49 -G91 0.0951851252663118 N59 -S98 0.0932367579081426 V55 -G91 0.0928914503151868 F60 -S96 0.0910529594521501 P66 -P97 0.0887161094598774 C68 -I94 0.0884616986826925 M72 -I94 0.088410653965532 C68 -I92 0.0878903377540165 L48 -A93 0.0876212541521033 L58 -V87 0.0872426168264058 L46 -G53 0.0841427125694683 L46 -L89 0.0827875711538368 L46 -N59 0.0815686144046457 D47 -I92 0.0812275257026136 C65 -A93 0.0777131164459421 K52 -L58 0.0773443224874812 L51 -N59 0.0744654204928135 A50 -I92 0.0736516702671652 V69 -I94 0.0733122683745029 G49 -I90 0.0731170173639226 L58 -E71 0.0711601275221794 N59 -V69 0.0703245156175896 W64 -V69 0.0694219262409383 V57 -N86 0.0684630752958171 N59 -I90 0.0625335313648998 P67 -G91 0.0610812763472524 L48 -F60 0.0607581878436023 P67 -A93 0.0600376412707941 G91 -P97 0.0592904451524223 V55 -N86 0.0578400080113464 F60 -P66 0.056385506947296 W61 -A93 0.0554938349929408 L51 -I92 0.0554125601817321 C65 -I94 0.0552366384657539 L48 -V87 0.0541101821341989 N59 -V87 0.053495273514955 F60 -P97 0.046972662426485 W64 -I92 0.04134040531655 L51 -Q85 0.0397447854333732 C65 -M72 0.0365258932528698 A50 -L58 0.0363461204260931 T63 -A93 0.0339358292428948 G91 -S98 0.0323948697032475 L46 -I94 0.0309623686276117 F60 -P67 0.0295397614999144 D47 -G53 0.0265954026739554 L46 -A93 0.0265371613547938 K52 -N86 0.025504007298935 A50 -V55 0.0225143946644715 L46 -K54 0.0189406598635133 V57 -E71 0.0184194615578178 N59 -A93 0.0139855866213168 N59 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