[Mon Aug 29 17:36:15 2016] >Input file: TMA6GR87M6G.pdb >TM segments: 82-96_ 120-128 MAIDEN score = -0.4572 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L82 -V87 0.363943133003612 N86 -G91 0.221023386820465 G91 -S96 0.150418751056933 N86 -L123 0.142959496901788 N86 -E122 0.129319799000626 G91 -A126 0.129296535712458 N86 -T121 0.103798017621803 L82 -L123 0.0954580775937051 A84 -L89 0.0952853083432434 Q83 -L89 0.0776547727698018 Q85 -L123 0.0719627891090262 V87 -G120 0.0708788557486169 L82 -A126 0.0683331748802658 Q83 -I90 0.0594941018105457 N86 -G124 0.0593779403442226 V87 -I92 0.0534448530918983 A84 -I90 0.0500844619909007 L89 -A126 0.049710876810992 I92 -A126 0.0463832550189718 Q83 -G91 0.0448157465957078 V87 -L123 0.0165191886704568 I94 -L127 0.00562970428032727 T121 -A126 0.00349370057451592 G120 -K125 0.00320773832706989 Q85 -I90 -0.000208528998683732 L82 -G91 -0.0116124324379063 I94 -G128 -0.0335872174241238 I90 -T121 -0.0456798257163 I90 -D95 -0.0537089865129707 V87 -T121 -0.0613097168393839 I90 -S96 -0.0837695003035055 L89 -I94 -0.0993714641953432 I92 -K125 -0.103331423566354 V87 -E122 -0.107028067336449 I90 -G120 -0.107128784083302 I90 -K125 -0.111703167274974 L82 -L89 -0.119264559498298 E122 -L127 -0.120278900540554 I90 -A126 -0.130716784675064 L89 -E122 -0.155572840389905 L82 -E88 -0.158327989555527 I90 -E122 -0.163158044053494 L82 -I90 -0.16325686825544 N86 -G120 -0.208905982196596 L89 -K125 -0.237848093303698 Q83 -E88 -0.293962528978