[Mon Aug 29 17:36:33 2016] >Input file: TMA6GR87M8G.pdb >TM segments: 38-68_ 110-118_ 146-154 MAIDEN score = -4.6489 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- W61 -C68 2.36222056344265 T40 -L115 1.19279413691824 P41 -A116 1.00461733837307 F38 -L115 0.893439613076437 T40 -L46 0.815809306009093 P41 -L115 0.746034624544708 F38 -A116 0.614563399586271 F38 -L46 0.599495732333056 L46 -L115 0.466332067261304 L51 -V56 0.460643203335627 N59 -I154 0.432520733601503 W64 -M118 0.39523041995673 A44 -A50 0.376942492545784 W61 -P112 0.362137317150939 N59 -R153 0.329422987330711 F38 -G117 0.317947911933758 L46 -G117 0.284783634966967 S45 -G117 0.283847837899234 F38 -S45 0.279528691612267 P41 -T63 0.27829114388442 T40 -W61 0.260948409428211 F38 -G49 0.258825685612169 V56 -E146 0.247598121552974 V57 -E146 0.246034239484765 N59 -C65 0.245986800391732 L58 -E146 0.2312183265315 N59 -G117 0.219979819457155 D39 -G117 0.210293788138209 L48 -V56 0.209401899021534 F60 -Y111 0.205494128526822 Q42 -P112 0.203806827859588 W61 -I113 0.203603462009049 T40 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