[Fri Aug 26 17:54:27 2016] >Input file: TMA6TBR2M1D.pdb >TM segments: 103-119_ 132-153_ 163-180 MAIDEN score = -17.0095 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V118 -F138 0.764960498227052 A114 -F138 0.635008452618838 A114 -V139 0.610945211689703 A113 -V139 0.608108145990689 L110 -V139 0.536762387225069 A111 -V139 0.526080981824066 R105 -L110 0.51284872958164 A114 -V142 0.497984923688677 L110 -V142 0.462920022041066 A113 -V142 0.419522469125731 L110 -T143 0.401535192860412 I119 -M135 0.338071566666308 G109 -A146 0.330486773712835 A111 -S137 0.303854042398414 G109 -S116 0.299362903053982 A171 -S178 0.288414879411935 V117 -V139 0.251271917222518 H164 -L172 0.249973641331313 V118 -M135 0.214204692048742 S133 -V139 0.20978311880573 A115 -S137 0.208647661528234 W163 -W168 0.204405755109552 F167 -V173 0.204221385690521 M135 -V142 0.203590728380392 V153 -W163 0.202113614845419 L110 -M135 0.201943089736252 H108 -V142 0.194432114378282 F106 -V139 0.192939960956626 F107 -V142 0.169242884975364 A112 -I119 0.163299741733545 S116 -M140 0.160193232957915 L110 -P147 0.157849808607199 H108 -T143 0.156149726808491 A150 -H164 0.150798269883843 A115 -R134 0.143816798283958 H164 -A171 0.143625371860936 S116 -S137 0.139758368208762 H108 -V139 0.13474999517041 V153 -H164 0.13266576458316 H108 -A146 0.131826632792739 V118 -S133 0.130996839381037 V117 -L141 0.128932030778487 H108 -F138 0.123705829475753 R105 -A113 0.123069528745839 A114 -R134 0.117663653618878 A111 -S133 0.116697845477519 V118 -L141 0.116682156580819 I119 -V139 0.114461589292787 A113 -T144 0.114228411185789 V103 -V139 0.111804176231424 V103 -A112 0.104964841568407 M140 -I145 0.104524245193296 T143 -P151 0.103808096365862 W163 -L170 0.101486422369366 H108 -A115 0.100674669438794 V103 -P147 0.0997760343878626 A171 -L176 0.0990410777132542 L110 -L148 0.0982176078294175 H108 -S116 0.0968028382203117 L170 -A177 0.094384063559948 A115 -L141 0.0942718619514908 R134 -M140 0.0929041894769291 I119 -L141 0.092439739391111 V103 -T144 0.0923403123103155 M135 -L141 0.0906183699444458 L110 -S137 0.0905507138077066 A115 -S133 0.0889099809109304 F106 -V142 0.081387271974803 A112 -M140 0.0806905929928398 V103 -A146 0.0796798692182588 L110 -M136 0.0795136380521848 A113 -S137 0.0792706007933639 A112 -F138 0.0787453747500155 F106 -L141 0.0773813384240674 W168 -V173 0.0767187960447009 V139 -A146 0.0743329842981444 A114 -I119 0.073892603535807 S137 -T143 0.0723419213103167 I119 -V142 0.0713345979952631 A113 -P147 0.07115327093857 S137 -T144 0.0690932129409498 G109 -L141 0.0690755261320302 G109 -I145 0.0673688817617597 A114 -T144 0.0669620692983024 F106 -A114 0.0661680561348339 A111 -R134 0.0638883237690609 A112 -M136 0.0634743002009093 R105 -T143 0.0611307442702469 M135 -M140 0.0606883754850214 P147 -V153 0.0606402296378485 A112 -L141 0.0605737543528386 A165 -V173 0.0599865199426892 V117 -S137 0.0550906224105736 M104 -A112 0.0548009769316882 F107 -T144 0.0540890443313509 V117 -R134 0.0530240299451077 A115 -V139 0.0517972293067572 V103 -V142 0.0499804028701352 F107 -M136 0.0492946715426236 A115 -F132 0.0491225742520118 L170 -L175 0.0484277353565141 A114 -A146 0.0465501383859578 A115 -V142 0.0458983623301368 A113 -M135 0.0451077757802101 L110 -M140 0.0403388204482233 M152 -F167 0.0395665481999643 H108 -L141 0.0384708532662219 A114 -S133 0.037792317768246 A115 -T143 0.0362221781150665 V139 -P147 0.0355299370365629 F107 -A115 0.0346154986480514 S116 -V142 0.0341605056242019 R134 -L141 0.0325971070977968 F106 -A150 0.029620683158484 V173 -S178 0.029457435371075 S116 -M136 0.0285130624433571 T143 -L148 0.0269720070762105 M104 -A114 0.025347571081527 I119 -S133 0.0243054265663467 M136 -T143 0.0243051151555789 A112 -M135 0.0217921982953193 W168 -L176 0.0212265156783955 A111 -F132 0.0185558054535937 A111 -T144 0.0166741505987258 I166 -A171 0.0155212166789216 A113 -A146 0.0146630487784343 M104 -V139 0.012726830634012 V103 -H108 0.0118785346474688 V103 -A111 0.0111707894159485 F132 -M140 0.00837080278257041 V117 -M140 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