[Fri Aug 26 18:13:01 2016] >Input file: TMA8L2A2M1D.pdb >TM segments: 193-209_ 215-231_ 260-274 MAIDEN score = -7.9843 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I220 -L226 1.22136478958494 V200 -V225 0.791852355509269 T202 -L224 0.76537789733362 L199 -V225 0.687693891310483 L193 -M231 0.644101279147294 S204 -I220 0.600955953676709 R223 -G228 0.579221105290464 F217 -W222 0.570581904907576 V200 -L224 0.567945483304975 T195 -M231 0.558989702085262 I220 -V225 0.551977409024134 S207 -S219 0.551709534761914 S204 -S219 0.542534901393536 V218 -L224 0.516850230285829 S207 -S216 0.511400254531178 A206 -V218 0.494148776956147 V200 -L229 0.472395593776876 L199 -R223 0.432828189796124 L205 -S219 0.431643489574876 V200 -L226 0.416127078969393 I220 -M227 0.415568726948045 V201 -L224 0.406677507522769 V201 -V225 0.40570045775382 S204 -V225 0.394164280997837 G196 -M231 0.389492359325273 T202 -S219 0.364070637960645 V200 -G228 0.361811196493921 L199 -M227 0.357016039043344 L198 -G228 0.352069896889416 S216 -A221 0.345519416511618 A206 -S216 0.337655252063032 S207 -P270 0.333702602688819 A206 -A221 0.324169209532672 G265 -G274 0.312263536616144 V225 -G230 0.304315211769962 G196 -M227 0.303938096029074 I194 -M231 0.299160079485109 A260 -G266 0.297171924583137 V200 -M227 0.284119869841586 G197 -L226 0.282739890956421 T195 -G228 0.27871672886081 V218 -V225 0.273764531199623 L199 -L224 0.263454898888837 L199 -S219 0.257728432556509 G197 -Q263 0.247213427033869 T202 -L226 0.241636807581105 A221 -L226 0.231702498489319 G203 -I220 0.225631997187781 G203 -G230 0.220146192981823 I220 -G230 0.219764351464364 G203 -V218 0.211744270422183 T195 -G203 0.210074073449463 G203 -R223 0.205229169546876 S204 -A221 0.202109056195919 V201 -R223 0.20039123285639 S207 -T215 0.198741644496708 R223 -M231 0.196875008850625 G266 -G274 0.196066186158327 G196 -L229 0.195843536266969 A206 -R223 0.187065286147562 L198 -V225 0.181755536987422 F261 -G266 0.178253305519181 L199 -S207 0.177724019931001 S204 -R223 0.165950062049553 G197 -A221 0.16081753545371 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