[Mon Aug 29 18:07:12 2016] >Input file: TMA8MWL7S1G.pdb >TM segments: A34-54_A83-106 MAIDEN score = -5.6700 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- Y85A-I94A 0.568315209915212 F88A-A95A 0.545501612096452 L48A-A53A 0.505796001337173 R35A-A40A 0.461266164685367 G86A-I94A 0.452810594141827 F88A-L93A 0.439882986262085 L99A-K104A 0.365562702250888 F88A-I94A 0.331556627317935 G34A-G42A 0.311050023971397 S38A-G46A 0.29830433977458 K87A-G92A 0.282447268388442 Y85A-L93A 0.265221065156605 Y85A-A97A 0.235561918055029 L44A-A49A 0.22809904495012 S38A-S47A 0.227241768032933 K87A-A97A 0.219841784579035 Y84A-V91A 0.202072182097106 K87A-I94A 0.199245681250953 Y83A-G92A 0.177664221172227 F45A-Y54A 0.169525007182851 G34A-L39A 0.166156613029435 G42A-G50A 0.161161759447698 S47A-G52A 0.161000586092443 L43A-G52A 0.160340214225004 A41A-G46A 0.160097160375693 Y85A-S98A 0.154667640123196 A41A-G52A 0.149340202966576 F88A-G96A 0.148529253940715 S98A-G106A 0.146742214928797 G92A-M101A 0.146148244186525 M89A-S98A 0.141271966528643 Y84A-P90A 0.138879959269045 A41A-A49A 0.137299423249198 Y54A-Y83A 0.130529969909481 G96A-K104A 0.122799671518416 K87A-G96A 0.119286011707046 A40A-S47A 0.118444578229095 K87A-L93A 0.117835267747254 R35A-G42A 0.117155030482865 V91A-L99A 0.116381345874328 S38A-A49A 0.113727175050538 G42A-V51A 0.112552804825618 K87A-S98A 0.111667353688163 V91A-S98A 0.11077665503875 Y84A-A95A 0.110168290793084 G86A-G96A 0.107062714487221 A40A-A49A 0.103576052752072 Y85A-G92A 0.101211684150234 G42A-A53A 0.100496426953795 G96A-G106A 0.0974351047564577 Y83A-L93A 0.0954742376134143 G34A-A41A 0.0905290055936412 V91A-G96A 0.0808636417221233 G50A-Y83A 0.0788871439420991 G86A-A97A 0.0763144861160345 A95A-A103A 0.072418922046813 R35A-L43A 0.0683937573472215 L93A-A103A 0.0683221898859614 A36A-G46A 0.0650187593188176 L39A-L48A 0.0552733140412176 A97A-V105A 0.0545404525334323 L93A-A102A 0.0518353992067593 M89A-I94A 0.0425460308577668 P90A-L99A 0.0422063987490704 G86A-S98A 0.0391820923717003 L93A-S98A 0.0388136960871925 L39A-S47A 0.0387362206292738 P37A-F45A 0.0380174412070711 A49A-Y54A 0.0355699580595328 G86A-V91A 0.0352328454861226 L44A-A53A 0.0341914689842326 M89A-A97A 0.0273555607732079 G92A-A102A 0.0252107595628135 P37A-G46A 0.0187968460120715 G42A-G52A 0.00975090456142438 G34A-L43A 0.00940173647494369 G46A-Y54A 0.00918916174669882 A41A-G50A 0.00501493439086298 R35A-L44A 0.00336562335363588 P90A-G96A 0.00319370644181038 I94A-A102A 0.00256527541772217 F45A-V51A 0.0014065556132099 S38A-L48A -0.00090325902536469 A97A-G106A -0.0010427361519012 G86A-L99A -0.00117249101202699 G92A-A97A -0.00323005232932649 G92A-L100A -0.00581131309787963 S47A-A53A -0.0101898351829446 R35A-G46A -0.0147650657520364 A41A-V51A -0.0192473467602721 P90A-A97A -0.0234105709142245 I94A-K104A -0.0243764450423374 L43A-A49A -0.029148598282116 G86A-G92A -0.0306762078691543 F45A-G52A -0.0376790129875131 L39A-A49A -0.0397349657485728 V51A-Y83A -0.0414040600451884 G46A-G52A -0.0488210319979174 K87A-L99A -0.0510452929033074 Y83A-F88A -0.0536376429856493 L43A-V51A -0.0620405718416492 F88A-L100A -0.065679731557033 S98A-K104A -0.0666281259693904 Y83A-A95A -0.0680580657745156 I94A-A103A -0.0693849053859417 G96A-A103A -0.0745474530388916 G46A-A53A -0.0761840759910343 S38A-F45A -0.0763723792828519 P37A-G42A -0.0765824579531764 L100A-G106A -0.079001261427468 Y84A-A97A -0.0810300413952252 G34A-A40A -0.0813175205365679 Y84A-L93A -0.0814394668660827 Y85A-P90A -0.0887968451133007 M89A-L99A -0.0895853453964939 Y84A-G96A -0.0907129198393841 L93A-M101A -0.0907139246247677 L44A-G52A -0.0940500293800266 A40A-L48A -0.0943943683791097 L39A-F45A -0.0946066844461342 Y85A-L99A -0.0946104443806526 Y85A-G96A -0.0984487207253453 M89A-G96A -0.103423937329548 L44A-G50A -0.103989367629069 K87A-A95A -0.104084063877494 G96A-V105A -0.105236164945105 A36A-L44A -0.107473527026056 L43A-A53A -0.108314797204645 A40A-G46A -0.11182734825051 G42A-A49A -0.113328732462854 R35A-F45A -0.116658538057815 G46A-V51A -0.116790860143936 F88A-L99A -0.121093620050535 G42A-L48A -0.125998958785138 G92A-S98A -0.126910634351995 P90A-A95A -0.132100922144451 G92A-L99A -0.136306289285568 A95A-K104A -0.136345311600332 A36A-F45A -0.137925187560381 Y84A-G92A -0.139549706511244 L48A-Y54A -0.140186705280978 I94A-L100A -0.140869454606145 R35A-A41A -0.142141684081742 Y83A-I94A -0.144687054187952 Y84A-I94A -0.14574615232518 Y85A-V91A -0.147758650378677 G86A-L93A -0.148383078545152 A97A-K104A -0.149776005689155 Y84A-M89A -0.150447999806036 G34A-K104A -0.152769258115871 I94A-L99A -0.155130015412629 L39A-G46A -0.157170456452633 L43A-G50A -0.157473628478465 F45A-A53A -0.15926883467883 G96A-M101A -0.16941546380585 F88A-A97A -0.182718308173837 S38A-L43A -0.190786423369667 A41A-S47A -0.192937137531045 M101A-G106A -0.193774582552913 A41A-L48A -0.196748802312437 A95A-A102A -0.199545406640242 F88A-S98A -0.205001368843876 V91A-L100A -0.215310636658133 A40A-F45A -0.221224135440643 L44A-V51A -0.225693952153608 L43A-L48A -0.228957936573442 G96A-A102A -0.232309259621787 A97A-A103A -0.237955622017388 A36A-G42A -0.243043173389359 A95A-M101A -0.24627940244809 S47A-Y54A -0.248058713656227 L93A-L99A -0.253994529114737 F45A-G50A -0.258459554237486 G42A-S47A -0.261899603181238 L99A-G106A -0.26992611714679 M89A-A95A -0.275392476189534 A36A-L43A -0.275883397537139 V91A-A97A -0.278262373885207 Y85A-A95A -0.289829800304519 L93A-L100A -0.29431839290571 A97A-A102A -0.29964815058864 A95A-L100A -0.30291924435152 A36A-A41A -0.313792276931299 S38A-L44A -0.318962218287629 L39A-L44A -0.324859040754065 S98A-V105A -0.329110989684114 L99A-V105A -0.351840461484439 S98A-A103A -0.370591775445995 P37A-L44A -0.380862291490686 I94A-M101A -0.392746165840599 L100A-V105A -0.411255434426122 G86A-A95A -0.484292945787062 P37A-L43A -0.519025461377284