[Fri Aug 26 18:17:46 2016] >Input file: TMA8ZKI0M5D.pdb >TM segments: 414-464_ 527-537 MAIDEN score = -12.5828 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- A458 -I464 1.61628960520121 A422 -D427 0.79359377289104 N459 -I464 0.766518040409162 I435 -A454 0.572325777796735 K456 -I464 0.529129941549865 A458 -L463 0.515424106724473 V428 -N437 0.436428245622034 N438 -K443 0.428690717480555 I439 -A454 0.380399480451371 K456 -H461 0.362943290817056 N438 -H461 0.359523807568188 N438 -K456 0.354196451500139 K456 -A529 0.353991229067408 C460 -K531 0.327585986448494 I439 -C460 0.321624618642291 N432 -M441 0.307560118555145 I435 -A458 0.301665067548482 M418 -D530 0.299312283032002 I435 -A455 0.296057085457029 I439 -V451 0.292363431371745 M441 -D448 0.290047027444931 P419 -K531 0.287382312205565 N438 -C460 0.277502846997849 A455 -I464 0.271718176948239 D433 -M441 0.257633154173133 H420 -K443 0.24893598605712 D433 -R440 0.248230405609693 Y436 -A458 0.232749132471184 N438 -A458 0.22016602934448 N438 -I457 0.218772636785486 D450 -A455 0.214084758269316 A442 -K456 0.208399106128258 R440 -A453 0.203365920500922 Q426 -T434 0.197374472111538 N438 -D450 0.191110071838048 Y436 -S447 0.187301015775339 A442 -D448 0.186292950284822 K456 -L527 0.18535197623663 N437 -S447 0.183804807782029 C460 -L527 0.183245451182394 M418 -V533 0.182993960373053 D448 -A453 0.182618636073905 P419 -P444 0.182280305601086 D448 -A455 0.178784011246402 P414 -P444 0.178355630542201 A442 -I452 0.174343703861552 T434 -H461 0.172818110791159 I452 -C460 0.170771285961031 T434 -K456 0.16920394109789 V424 -V534 0.166125384648379 I435 -N459 0.16284408716862 D427 -M441 0.162339060164152 D427 -T434 0.161121976997959 R440 -S447 0.153041252265915 N437 -K443 0.152132902245029 R440 -A455 0.149270620013559 D427 -N437 0.149102169108037 L421 -K531 0.148702025214662 Q426 -R440 0.14762600505951 N438 -D448 0.145513209391584 R440 -D448 0.139620650365132 I435 -A442 0.136363226126973 A453 -A529 0.129664293683191 A422 -N437 0.128819946035031 L430 -I439 0.126086223241545 Y429 -Y436 0.122875464135935 N438 -I452 0.121360268705826 A422 -N438 0.119273187301126 A415 -P444 0.118951658906296 D450 -A458 0.117581744825376 A415 -R440 0.113392690755476 T434 -G462 0.113337545721522 L421 -A537 0.113112860083791 L421 -A442 0.111367188984735 A423 -A537 0.109579689913103 A446 -A454 0.109128635799749 N438 -A449 0.105594539302566 V428 -I435 0.104814193271405 V428 -M441 0.104675237117804 R440 -A446 0.10467074169763 M441 -I457 0.103687113734144 A415 -A442 0.102207040096906 I457 -I464 0.0989298066545672 P414 -A422 0.0986085308988427 P444 -A453 0.0984823096898411 Y429 -R440 0.0980361351295542 I457 -A529 0.0968632595746648 N437 -N459 0.0962382781732503 V424 -Y429 0.0953597103915955 H420 -A442 0.0902115414803504 N437 -A453 0.0889486751854101 I435 -I452 0.0886522328330956 I435 -R440 0.0864959770627656 L421 -R440 0.0859975132132379 I439 -A446 0.0849696290533646 A442 -A455 0.0838502400367291 M418 -A442 0.0826593619310127 D427 -N432 0.0784770572613893 A454 -G462 0.0782395640179914 C460 -A529 0.0778635467599744 P419 -V535 0.0776864497443741 S447 -K456 0.0759909842990183 N437 -A455 0.0748524915744473 A442 -A458 0.0744538954746821 D450 -N459 0.073379513950603 A423 -L430 0.0732991232831885 K443 -D450 0.0718849563962345 V424 -V533 0.0714770023127915 I457 -V528 0.0713210216826292 I416 -M441 0.0709884658331861 V445 -I457 0.069992898582018 M418 -T532 0.0699024590302693 Y436 -I452 0.0692990956423247 A529 -V534 0.0684476842409785 I416 -P444 0.0672209408645048 I435 -L463 0.0666526058759666 I435 -H461 0.0648494801309187 N438 -G462 0.063992341804628 R440 -A458 0.0637619632633699 Q426 -V535 0.0621435284830176 Y436 -N459 0.0620926476186845 I439 -L463 0.0613936125312091 N437 -I464 0.0594347852518093 Y436 -P444 0.0565676972248574 L421 -N438 0.05625860830669 F431 -I439 0.0560539902499763 Y436 -A455 0.0557747867653511 I435 -D450 0.0549955320396527 P419 -T532 0.0546564052471812 A454 -A529 0.0541735261653069 T434 -A442 0.053693188660517 D448 -K456 0.0531356033122425 A422 -A537 0.0525060594917117 L421 -T532 0.0511835942487684 S447 -A455 0.0504974724674092 I439 -A455 0.04953379957586 I439 -H461 0.0486421582596441 R440 -A449 0.0481934855707689 I435 -V451 0.0470997943635076 M418 -P444 0.0464680492943306 H420 -V428 0.0447039774852254 H461 -A529 0.0438923503159846 P414 -M441 0.0434099115784164 A453 -L527 0.0434081438493801 H420 -I457 0.0430217242733055 A453 -H461 0.042598153386583 N438 -V445 0.0422032129159957 N438 -S447 0.0416423836903688 I416 -V445 0.0407620119114167 L430 -N437 0.0400960676438493 F425 -I536 0.0400541051757646 M441 -A449 0.0400352275858773 M441 -A458 0.0377229347342221 V445 -A454 0.0367796888228273 A453 -L463 0.0351601251002878 N437 -I457 0.0339971677162372 I439 -D448 0.0331620766567036 T434 -A453 0.0309799532950243 N438 -N459 0.0298038870196673 T434 -D450 0.02871805678729 I457 -L463 0.0286964003304497 M418 -M441 0.0286704280347871 D427 -N438 0.0286119481247699 A422 -V533 0.0277551879639222 I435 -S447 0.0274702192669078 L417 -P444 0.0273910073444821 Y436 -D450 0.0272722919905979 A423 -Y429 0.0229144239003962 A453 -I464 0.0224131989549985 T434 -I439 0.0213763240799132 T434 -V451 0.0211301133254018 N437 -D450 0.0205970560769944 T434 -I452 0.0193847722796665 H420 -Q426 0.0182973623209332 L430 -N438 0.0176514073077207 M441 -A453 0.0167416925493118 H420 -A529 0.015866778217311 C460 -V528 0.0149963573167451 A415 -V445 0.0142997441088646 A422 -Y429 0.0136321274805959 P444 -D450 0.0128713948815902 M441 -S447 0.012651600831024 M418 -A529 0.0126416963048097 D427 -D433 0.0125852645526723 Y436 -A453 0.0111321348835104 H461 -L527 0.0101465850715523 V451 -K456 0.00993561301888501 H420 -V535 0.00946020261478431 I452 -H461 0.0092991408542531 R440 -V451 0.00834539804452383 P444 -V451 0.00748644381661329 A422 -T532 0.00681503717810328 N432 -A458 0.00625952966292331 I435 -G462 0.00406623466216427 I435 -A453 0.00372940197329896 L527 -T532 0.00349189671696692 L421 -V428 0.00247047041254422 Q426 -I536 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