[Mon Aug 29 16:48:59 2016] >Input file: TMB0CDR2M1G.pdb >TM segments: 428-475 MAIDEN score = 21.3712 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- G453 -D458 10 Q454 -Q459 10 H443 -N449 1.42927897643711 A451 -K467 1.07070130157044 A460 -K467 1.05991752391811 V435 -F440 0.967712214411233 L428 -Q456 0.944275066936352 A451 -D458 0.813574487644569 Y447 -A471 0.668008663668099 Q454 -V462 0.651744326294398 L428 -P455 0.631037452867799 A451 -N468 0.620712835377658 P455 -A460 0.576396111336786 Y447 -Q454 0.463721756513469 Q454 -K464 0.427993430952292 P455 -K467 0.427570423878782 A451 -A460 0.414869084295629 P455 -E470 0.395971325543394 Y447 -I475 0.394119620509756 I450 -A471 0.394036260542437 K464 -E470 0.393333906712353 K467 -E473 0.391892768999599 K467 -H472 0.382534266132142 A451 -A465 0.36242558065104 E470 -I475 0.36144051283388 L441 -N449 0.35636735721325 E448 -Q454 0.314989243552773 Y452 -I457 0.293159333074073 L428 -Q454 0.281251520011461 G453 -A460 0.272554285194916 G453 -Q459 0.271340675370271 Y452 -H472 0.269839694032331 K464 -H472 0.269601238380137 Q454 -A460 0.252980346423416 G444 -N449 0.252850274003363 Q430 -Q459 0.251809781525109 P455 -E463 0.246413468278134 Q459 -N468 0.244541045296088 Q430 -G453 0.241094301468979 P455 -V462 0.238218223372112 Q454 -F474 0.23783430194271 Y452 -F474 0.230190407921079 G453 -N468 0.229712132320844 E448 -F474 0.225176141701339 A460 -A471 0.222832923077839 Q454 -E463 0.220562966476573 Q461 -E470 0.211882834177912 A431 -G453 0.199668056497043 N449 -Q459 0.192388497256631 L434 -V439 0.18895904393622 I450 -I475 0.187710811090342 G433 -Q459 0.185121628533349 A451 -I457 0.183355659702883 N449 -E473 0.180635693056349 N449 -D458 0.179958806906665 Y452 -E463 0.177601416387483 Y447 -A469 0.177460242204688 H443 -I450 0.174629065035096 G444 -G453 0.171273117904579 H443 -Y452 0.15941600321412 Y452 -A460 0.157278744222447 E448 -A471 0.150657357331193 G453 -A471 0.146682311610275 I457 -V462 0.146502635152642 F442 -G453 0.145646840869233 I450 -I457 0.138157234630328 L434 -G453 0.138151695291683 V439 -V446 0.135775903672646 L428 -I457 0.135595151025331 G433 -P455 0.132790337475345 V435 -L441 0.130035129368025 Y447 -Y452 0.129565604779198 Q454 -A469 0.128762582468592 G433 -Y452 0.125070814549597 L434 -Y452 0.122681993434766 L428 -Y452 0.122580234277346 T445 -N468 0.119538432633234 E448 -E463 0.118327607548089 I450 -A466 0.118278782797876 G453 -A469 0.116211850721697 Y452 -I475 0.114800620747854 Q459 -H472 0.114763212084473 G453 -E463 0.113542353889266 L428 -L434 0.113477507586124 L434 -L441 0.11289243166992 A465 -E473 0.112883933514914 A451 -Q456 0.110280178006286 A460 -A469 0.110020765240668 V439 -T445 0.109797445761601 A431 -Q459 0.0997864030433631 E448 -K464 0.0994744700767107 R429 -G453 0.098782378181026 V446 -H472 0.0979542055973432 E448 -E470 0.096685354088077 P455 -A466 0.0957462201987251 Y452 -A466 0.0949481642587449 L428 -A460 0.0943854647364354 Q461 -K467 0.0943845921147838 L441 -I475 0.0938017842234385 A465 -E470 0.0937151314851059 R429 -Q459 0.0929046842734431 G453 -E470 0.0904905248083687 L434 -I457 0.0890959773457428 Q459 -K464 0.0870864379627886 I450 -V462 0.0849468919405361 I457 -E463 0.0833804624097341 T445 -I475 0.0830901696857849 Q454 -K467 0.0822855291956389 N449 -Q454 0.0819756096084807 R429 -Q456 0.0815947664240849 R429 -Q461 0.0803909700225112 I432 -P455 0.0792184754844381 A460 -H472 0.0791208788837459 G433 -I457 0.0786290088322952 F440 -T445 0.0786119645650336 I450 -Q461 0.0771781191019585 L434 -F442 0.0760776458074841 L441 -Y447 0.0744884140502617 Y452 -D458 0.0740985194229578 E448 -E473 0.0720746091944972 Y452 -E470 0.068847021685091 Y447 -E473 0.0679543718312075 V446 -G453 0.0676636558178458 H443 -G453 0.0633921885558943 A465 -I475 0.0627650383161376 A451 -E470 0.0624713459951506 L434 -I450 0.0615550218911631 L434 -Q456 0.0611080444425767 F440 -G453 0.0582902893106789 Q459 -K467 0.0574213791777831 L441 -G453 0.0562332812101805 Q459 -F474 0.055097457165266 N449 -A460 0.0549401060193588 K467 -I475 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