[Fri Aug 26 16:40:04 2016] >Input file: TMB0CN15M1D.pdb >TM segments: 301-320_ 331-351 MAIDEN score = -9.2925 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V345 -L350 0.707727578458949 V312 -L335 0.65191383608083 V312 -G331 0.637441147059031 A344 -L349 0.61359478889821 L315 -S320 0.584414826708792 F343 -L349 0.403679470894055 P311 -S339 0.318316710996736 A344 -L350 0.236264390792404 A341 -S347 0.215763322380519 G331 -S339 0.209706455667985 G306 -S339 0.202072736933552 L307 -T313 0.197172095675091 N334 -L342 0.195942487219675 F343 -L350 0.190243517919594 P311 -L337 0.18491640312237 S320 -V332 0.182584838462787 G308 -N334 0.180548236291179 P311 -L317 0.176306862978192 A310 -I316 0.174423413044904 G331 -A341 0.163384728779882 F309 -S339 0.158007653134962 V312 -S339 0.153331755686951 G308 -G331 0.151350747042587 T313 -K333 0.145963066446879 V319 -V332 0.134930182608083 L317 -N334 0.132428439110884 A340 -S347 0.130474008970587 L307 -L314 0.129747462931768 P302 -G308 0.128234780772312 P302 -S347 0.12729195359879 P302 -L342 0.125729190286258 A340 -L349 0.120406039863437 A340 -V345 0.120297557041241 V312 -S320 0.119375409891046 A305 -S339 0.119227265842084 G308 -I316 0.118599897478746 S320 -N334 0.117845976869983 A338 -S347 0.117340401993363 L307 -L342 0.116021062117762 A310 -G331 0.115929036986625 S320 -K333 0.114871308877349 G308 -V332 0.112906058724708 G308 -L315 0.108540117398615 A310 -V332 0.106257648115561 G306 -L335 0.103772446455872 A310 -S339 0.101109795385356 A341 -L349 0.0997837884859716 A310 -G318 0.0966412172553065 M303 -L342 0.0956428923509702 T313 -S320 0.0934280174135722 T313 -V319 0.0915814916245417 G331 -L336 0.091450012777007 L317 -L335 0.0885100247375707 A341 -S351 0.0862653088746477 V312 -A340 0.0832100016032351 A341 -L348 0.0819523532056505 L317 -G331 0.0739723734328841 K333 -A341 0.0715616734642914 I316 -V332 0.0714749012493714 P311 -A341 0.069339611406285 L315 -N334 0.0668490979506453 G306 -S347 0.0655392747131924 L335 -A344 0.0650046717053259 M303 -S339 0.0633320532512596 T313 -N334 0.0624796900540838 L307 -F343 0.0607901919572438 F309 -A338 0.0602816983476948 A310 -A338 0.0573898307957705 L336 -A344 0.0572249794495294 A310 -L317 0.0552579786208691 M303 -S347 0.0547283333445727 G308 -L342 0.0534394058720791 M304 -A310 0.0529100478712969 G306 -P311 0.0505162609279644 A305 -L342 0.0499451319039301 P311 -G331 0.0498718855328024 L315 -V332 0.0492519414058297 L307 -A338 0.0488822350490872 M304 -P311 0.0475066745293733 A340 -L350 0.046650481606793 G306 -G346 0.0462813412677359 L307 -S339 0.0456248385009232 M303 -F343 0.0438765663739544 G308 -L337 0.0421651799382432 P311 -L336 0.0372405856620404 G308 -L336 0.0364317066744011 P311 -G318 0.0364254376549873 G331 -L337 0.0345156075732547 A340 -L348 0.034227484245716 L337 -G346 0.0330252376397464 L314 -L335 0.0315651722176478 L315 -L337 0.0312205954922309 S339 -L349 0.0309064370310761 F343 -L348 0.0289756495178466 P302 -G346 0.0254533124952383 G306 -V345 0.0254428470078438 G318 -L335 0.0226907959364486 T313 -S339 0.0203823376259056 P302 -A310 0.0197013992571282 A338 -G346 0.0194823464732456 L315 -G331 0.0191634446136906 F309 -I316 0.0181832501726095 A340 -S351 0.0175372809439924 S339 -S347 0.0148792608812881 F309 -V332 0.014771707316219 V319 -G331 0.013695842587774 T313 -A338 0.0112797764706698 F343 -S351 0.0108545316343012 L336 -G346 0.0107554038691955 G308 -A340 0.0101552666215201 P302 -F309 0.00996020487139582 G306 -A338 0.00813766722209586 G331 -A340 0.00797995807808372 P302 -F343 0.00775915368024171 V319 -N334 0.0076058705557589 G308 -L317 0.0069076330553437 G306 -L336 0.00546278711117365 L315 -A338 0.00512999162354877 F309 -G331 0.00172505937519229 S301 -G308 0.00151501957654032 G306 -A340 0.000940470138191429 N334 -A344 -0.010586736866089 A305 -P311 -0.0123258158704931 A305 -V312 -0.0144027790321108 F309 -L317 -0.0144123083829504 I316 -L336 -0.0185380061363327 L307 -L315 -0.0200631715447361 G306 -V312 -0.0211835292596545 V332 -A341 -0.0246467816808931 V332 -A340 -0.0248689544493395 I316 -G331 -0.0279264385996632 V312 -A341 -0.0285264926123396 S339 -A344 -0.0285467754529138 V312 -V319 -0.0286290712907276 G308 -A338 -0.0293392116986766 I316 -N334 -0.0304184480423659 L314 -S320 -0.0323221391529938 G306 -F343 -0.0341640963136891 L307 -V312 -0.0344423600657571 F309 -L335 -0.0357102157904725 L335 -A340 -0.0366619060466746 L307 -L336 -0.0383939777155042 A310 -L315 -0.0384653435777089 G306 -A341 -0.041265327702007 G308 -A341 -0.0458746561678263 G318 -G331 -0.0478847669909692 A310 -N334 -0.0497520514903516 S320 -L335 -0.0498352613003821 V312 -L342 -0.0507551834117956 L314 -V319 -0.0510641180708777 M303 -A310 -0.052833497570338 F309 -G318 -0.0535219366164875 G306 -T313 -0.0543343636637911 G318 -V332 -0.0582151505229112 P311 -V319 -0.0589168422646558 K333 -S339 -0.0599206505583649 L314 -N334 -0.0609998027429313 T313 -G331 -0.0611902211184092 G308 -F343 -0.0651461600201824 P311 -V332 -0.0709938737606612 A338 -V345 -0.0728408792421273 K333 -A338 -0.0767290447614131 P302 -L348 -0.091034860526797 N334 -A341 -0.0920006375120098 V312 -K333 -0.0928961802569424 M303 -P311 -0.0938367784363163 M303 -L348 -0.0966066669754548 A305 -A310 -0.0970926667139427 P311 -L335 -0.097170480541636 S339 -L350 -0.0973080880978081 I316 -L337 -0.0982157145918907 I316 -A338 -0.0990562240210169 N334 -S339 -0.0992647224706665 L314 -G331 -0.10110024445259 T313 -L336 -0.10384328344556 L336 -V345 -0.105269837117442 A310 -L335 -0.10778241493197 L337 -V345 -0.112005861560036 F309 -L315 -0.117722103512345 V312 -N334 -0.122414035844483 G308 -L314 -0.127329670081346 P311 -I316 -0.127642426552375 V312 -G318 -0.128897890690763 F309 -L336 -0.129676728504678 A340 -G346 -0.134129715881634 M303 -G308 -0.13849488510964 L317 -V332 -0.139471130152504 G308 -S339 -0.13961546850183 P311 -A338 -0.141718906300963 S339 -L348 -0.145654461929417 S339 -G346 -0.148053377989116 L336 -F343 -0.14915345647372 L314 -A338 -0.14976076918784 P311 -L342 -0.150806824290428 V312 -L337 -0.15131291100777 T313 -V332 -0.151802289027744 L335 -A341 -0.157361048290632 L315 -S339 -0.159013532232852 L335 -F343 -0.161100078205588 N334 -A340 -0.163822450098265 P311 -S320 -0.16429356965068 G306 -L342 -0.174565767476359 S320 -G331 -0.176834348540442 L337 -A344 -0.179199497225712 G331 -A338 -0.180819433210858 L315 -K333 -0.180888351799853 M303 -G346 -0.181424555667082 L335 -L342 -0.187481193191432 L342 -L348 -0.18776342527737 A341 -L350 -0.193357540225948 F309 -N334 -0.1944314201338 K333 -L342 -0.196309728556493 L342 -S351 -0.200537691168004 L307 -L335 -0.203558369922163 L315 -L336 -0.207302352083405 A338 -A344 -0.213539471125845 M303 -F309 -0.214375487421879 S301 -L307 -0.21682535170058 P311 -N334 -0.218116380517968 L336 -A341 -0.22757389064996 L314 -K333 -0.227774651011266 G318 -N334 -0.22955136287773 L337 -L342 -0.229772825214495 P311 -K333 -0.230106958207789 F309 -L314 -0.230517034190006 L314 -V332 -0.231731850729699 N334 -F343 -0.232253752916475 L317 -K333 -0.23624871653543 L337 -F343 -0.245289318581511 A344 -S351 -0.253020798851185 V332 -S339 -0.254493589972884 S301 -G306 -0.25866602517418 K333 -A340 -0.260017457563545 V312 -V332 -0.265140349181836 P302 -L307 -0.269957790301403 T313 -G318 -0.275528711554833 T313 -L335 -0.287207319209273 V312 -L336 -0.290173522425686 M304 -F309 -0.308900461493097 V312 -L317 -0.317322874541667 V312 -A338 -0.334676947743601 G308 -T313 -0.337993882040391 G308 -L335 -0.344374516856162 A341 -G346 -0.347053081443321 L342 -S347 -0.353015435238133 I316 -L335 -0.355835431455308 V332 -A338 -0.358267684836266 I316 -K333 -0.360909300804767 S339 -V345 -0.362559061898607 L315 -L335 -0.387597891400222 V345 -S351 -0.395372826267421 L342 -L350 -0.404610086860698 L342 -L349 -0.413181065045327 V332 -L337 -0.451019280186428 A338 -F343 -0.453150307638098 L336 -L342 -0.460927323598462 G346 -S351 -0.572060874811528