[Mon Aug 29 17:04:47 2016] >Input file: TMB1AZA5M1G.pdb >TM segments: 80-94_ 111-131_ 148-163_ 174-193 MAIDEN score = -3.8081 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I115 -L120 10 I115 -L121 1.16838981788834 Y129 -F185 1.01293379955603 D128 -L188 0.775026715228021 L80 -L193 0.662009493491766 Y129 -L188 0.634042549791707 L158 -S163 0.584127172703746 H112 -L117 0.573826922412098 V116 -L121 0.535717053514067 D128 -F185 0.510975584017002 P153 -L182 0.474829384559949 L177 -L182 0.444091388744642 L155 -L177 0.413326576431803 L155 -A176 0.384026617182118 P114 -L120 0.371496816307365 P153 -L177 0.366787898437376 G152 -Y159 0.358876412823136 T113 -A119 0.353463614081505 L81 -L193 0.335658147760513 P123 -Y184 0.299998228408034 A111 -A118 0.294403415579591 L117 -L122 0.287216535490225 G152 -S187 0.285932782259543 C160 -A176 0.2844176378685 G151 -L158 0.280820493845123 H91 -H112 0.279270809647798 L124 -G130 0.277766909193621 T88 -T113 0.270788985543946 L155 -L182 0.268377122203578 G149 -L155 0.265225261916754 L80 -G87 0.260669245318014 A111 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Y129 -W191 0.157011951199063 L155 -R180 0.156624479778513 A118 -S186 0.156588629946057 L81 -S187 0.155156834724226 G162 -A174 0.153213375336282 Y156 -Y184 0.15226330486866 G157 -L182 0.151972902832734 G87 -T113 0.143273038986122 G149 -G181 0.142582452621451 A83 -H91 0.142247612482537 L155 -Y184 0.140427152624468 G152 -L158 0.139680910247541 G181 -L188 0.138563115662301 C179 -S187 0.137610159610408 C125 -S187 0.133392009600294 C125 -L193 0.133059009901206 A150 -D183 0.131802871284375 C125 -F185 0.131666966976379 G181 -S187 0.13156713464392 P123 -S186 0.1307801263222 L81 -L188 0.128829078640828 G152 -D183 0.127249559893891 P153 -G175 0.126948205534434 Y184 -W191 0.12556521686175 Y129 -G152 0.125009158969402 L121 -Y129 0.124771409564363 G87 -H112 0.124468482064529 Y159 -A176 0.124225604082358 G152 -G175 0.123596400257057 C125 -W189 0.122701650252431 P153 -L161 0.122652755147787 A176 -Y184 0.121748245531783 L121 -L188 0.121190342257498 A174 -R180 0.120275211206397 A150 -S187 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