[Wed Nov 23 03:36:42 2016] >Input file: TMB1B3L4E7G.pdb >TM segments: 34-60_ 110-123_ 170-188_ 212-230 MAIDEN score = -19.9116 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L117 -K177 1.18512862534087 V114 -I182 0.839915278147107 K123 -I171 0.734828454347485 W110 -L181 0.729264040477553 L117 -W174 0.676876576988287 F121 -W174 0.657449166449073 Y36 -L41 0.648863717804835 W110 -I182 0.583553086030456 K120 -I171 0.580001577030143 V114 -L181 0.562584065564709 F121 -I171 0.506331297998695 I222 -N227 0.46984820149938 K120 -Y175 0.454839822642343 F121 -Y178 0.448595026320868 K120 -Y178 0.443088166932695 K177 -P183 0.440343221117843 F187 -I222 0.42632431916656 F121 -K177 0.406904262115031 K37 -M43 0.399103739069211 I223 -P228 0.378403346046437 I179 -L229 0.355448201946517 V114 -Y178 0.345858754004187 G176 -V230 0.344137072311062 K123 -P170 0.339117702960218 W110 -P183 0.336997676063078 P49 -K54 0.335950976432872 K188 -N218 0.319166045300802 Y175 -P183 0.30399556680835 K120 -P170 0.303079953932176 P183 -N227 0.293238862854003 P52 -K59 0.28490050869773 W39 -G46 0.258135106163794 G176 -N227 0.229360831835696 L122 -T172 0.222155586308404 S118 -P170 0.215657343019675 S118 -S185 0.213993320378412 T172 -I180 0.204814825259694 N218 -Y226 0.203803575204639 L113 -P183 0.201511572233264 I115 -K120 0.198566997613718 L117 -P183 0.197422612969336 P170 -Y178 0.190896959532605 L113 -S118 0.189170846914795 V112 -F119 0.185659121588039 S118 -P183 0.185037240802586 A45 -I51 0.184360844146842 V38 -M43 0.183661085439009 S185 -Y226 0.17700685683789 Y186 -M224 0.176641522283908 F187 -S221 0.174036925112102 K123 -F173 0.171671007709782 N218 -S225 0.165782793859609 I48 -I53 0.161004506160848 L122 -W174 0.158276074124861 I111 -I180 0.156549841705733 I219 -N227 0.156430712087212 I111 -I179 0.155917366632329 W110 -S118 0.153954314206705 W39 -L47 0.15274502284146 Y175 -Y226 0.15058109823603 I180 -V230 0.150555158796019 S118 -I179 0.147954469478721 N218 -N227 0.146609451328559 K177 -S185 0.144680916730488 I53 -K59 0.142164858699509 Y40 -I48 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