[Fri Aug 26 17:00:11 2016] >Input file: TMB1KC87M1D.pdb >TM segments: 387-398 MAIDEN score = -0.4796 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- A390 -Y395 0.238317672715165 I391 -W398 0.197182752530338 D392 -I397 0.131810715353557 A390 -S396 0.0280503591221244 V389 -I397 0.0047390355789183 A390 -W398 -0.0323954117283018 N393 -W398 -0.0436273201525506 V389 -Y395 -0.0520385403202002 D392 -W398 -0.135043558459465 A390 -I397 -0.142993198624681 I391 -S396 -0.150738735139928 V389 -W398 -0.153882230691546 I391 -I397 -0.368934881453943