[Mon Aug 29 17:06:14 2016] >Input file: TMB1KKQ9M1G.pdb >TM segments: 597-610_ 622-628 MAIDEN score = 7.7115 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- K604 -L609 10 C600 -V605 0.383780804077613 C597 -K626 0.336378985651411 C597 -N603 0.27880988009071 K601 -G606 0.266085877408306 C600 -Q610 0.221089088672312 Q610 -T624 0.215316636164608 N603 -Q610 0.1878078864415 C597 -G627 0.164264732403936 C600 -G627 0.163875586509707 K604 -T624 0.16225091093802 K601 -D628 0.14170595950754 K604 -D628 0.110387863639753 L609 -M625 0.0953788286980899 C597 -A602 0.079860376644856 T599 -G606 0.0781175417259012 I598 -L609 0.0607336946913737 I598 -V605 0.060043745768116 C600 -V607 0.048620427501036 I598 -G606 0.0441974513944272 T599 -Q610 0.0412814952286845 L609 -K626 0.0407708569203127 T599 -L609 0.0263139665258452 T599 -D628 0.0201654243780829 K601 -L609 0.0169680320997285 Q610 -I622 0.0167526286782058 T599 -V608 0.0151896640912406 A602 -L609 0.00211057211470989 N603 -V608 -0.0215224245389676 L609 -I622 -0.0351744087484089 N603 -L609 -0.0372785412862058 K601 -K626 -0.0402046827440308 Q610 -M625 -0.0404597287952784 K604 -G627 -0.048916487134286 T599 -V607 -0.0503247902556683 L609 -V623 -0.0540778548709371 C597 -V605 -0.0756695748014806 I598 -D628 -0.0916189969347643 K604 -K626 -0.0988523960770991 C600 -D628 -0.0998082732731693 C600 -K626 -0.106544392193463 K604 -M625 -0.111611528955937 L609 -T624 -0.123010819938625 T599 -K604 -0.125112922510594 C600 -L609 -0.133409754287594 K601 -G627 -0.139948207255614 K601 -Q610 -0.146011803995591 A602 -Q610 -0.157528401301827 K604 -Q610 -0.159837324572829 T599 -V605 -0.174289006767985 A602 -V607 -0.198261641253243 V605 -K626 -0.208417034170431 C597 -K604 -0.242825772577262 K601 -V607 -0.242912952550533 K601 -V608 -0.243379344019231 C600 -G606 -0.24557303250699 Q610 -K626 -0.250982430372584 A602 -V608 -0.263402407030735 C597 -D628 -0.271450028276455 I598 -N603 -0.278336954846409 V605 -Q610 -0.329061204204762 I598 -K604 -0.347656484912186 C600 -V608 -0.373272112430303