[Fri Aug 26 17:11:14 2016] >Input file: TMB2FMN3M9D.pdb >TM segments: 111-122_ 130-140_ 152-164_ 174-182 MAIDEN score = -1.1567 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I134 -I177 1.64583351629025 A138 -K153 1.04281883578103 L160 -L175 0.900234117278141 D140 -A154 0.861342688466569 L131 -L175 0.795199144515986 V133 -I177 0.783991410424322 S136 -P179 0.744755610107418 L160 -V174 0.704539704640455 I134 -K153 0.674267354510219 L131 -V174 0.667794362652897 A132 -L175 0.598435872580539 S136 -G180 0.582964019047625 L160 -V176 0.574996097584835 L163 -V174 0.567131890927106 V133 -V176 0.566476167461235 I134 -V176 0.519255004977671 S161 -V174 0.474884451193545 S135 -A154 0.468118559625493 V133 -L175 0.463442148375883 I134 -P179 0.4591173913068 G139 -T157 0.444085614271332 S136 -I177 0.431040672018591 K153 -P179 0.336768324156991 A138 -A155 0.305116097502164 I134 -V156 0.29195767687996 A138 -A154 0.264976811148663 V133 -V174 0.261217896536126 S136 -A154 0.260633657779893 V156 -V176 0.259343314925902 A132 -K153 0.256548881725551 T157 -V176 0.255742771881867 G111 -A116 0.251076357392152 A132 -I177 0.247227187292681 V137 -K153 0.244505475489483 D140 -G180 0.240077480895591 T112 -L131 0.229552716986146 S113 -S135 0.22068352705339 T130 -V174 0.216573565369579 A155 -G162 0.216178747430338 S113 -A155 0.216074969220868 A154 -S161 0.212948532660945 I115 -G164 0.212223857336242 S113 -V133 0.21181818506428 G111 -Y159 0.208728469808035 V133 -V156 0.207235146394338 T157 -I177 0.203416347277355 T157 -K178 0.201895695240204 D140 -A155 0.193018558629086 T130 -I177 0.192787105804174 T114 -T130 0.190350124971956 S135 -P179 0.187718738249521 A119 -A132 0.177467655393151 G164 -L175 0.175552114499748 G139 -K178 0.172977793416303 A119 -G164 0.172783765144541 S118 -L163 0.17037343073081 I134 -A155 0.1694497981282 G111 -A158 0.164995993281533 S113 -K153 0.164930886938879 I115 -L131 0.164674256346375 S118 -L131 0.159481237346437 V137 -A158 0.158041260034318 A119 -V133 0.156566363368214 D140 -A152 0.155926988246563 S136 -Y159 0.155900802379958 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