[Mon Aug 29 17:15:12 2016] >Input file: TMB2FN97M1G.pdb >TM segments: 365-373_ 376-389_ 391-402 MAIDEN score = 20.4183 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V369 -F394 10 C384 -W389 2.42163916639202 L372 -W377 1.06203283413877 D370 -L395 0.894797764936964 A383 -W389 0.884042641866955 D370 -L380 0.841976770167919 V369 -R393 0.840939282394566 V369 -L395 0.800511814023865 V369 -E397 0.733094224387937 L372 -S378 0.720696829438207 A366 -F394 0.620734440105804 V369 -L396 0.618846375999119 W377 -V382 0.588301866550992 A371 -W377 0.579190358910709 A367 -F394 0.567774199811253 A366 -L395 0.555631409387986 A371 -P379 0.550831652300035 L372 -P379 0.535718061800982 D370 -P379 0.525395306597564 V369 -S378 0.452825878207473 A366 -A371 0.376576550649659 N373 -P379 0.370916056601739 E368 -L396 0.368852529300295 C384 -F394 0.361037099324491 E368 -F394 0.35490667453274 A366 -L396 0.35432152940125 D370 -R393 0.345055786330562 L380 -Q385 0.338331615450814 D370 -F394 0.328250265303769 L380 -R393 0.325891961996788 A365 -L395 0.313027557210999 D370 -R398 0.305038611665927 V369 -L380 0.301066315351203 C384 -R393 0.295698789707551 E368 -R393 0.256199776775495 D370 -E397 0.211030200541241 A366 -R398 0.205273709457861 N388 -R393 0.192902686736636 A383 -L391 0.185916159275005 V369 -P379 0.182950459430274 P379 -C384 0.177637141223628 A366 -E397 0.171525588919661 S378 -R393 0.162282146814945 A383 -F394 0.15657801328258 D370 -L396 0.147477248564185 A367 -G399 0.143898251124184 E368 -E397 0.142402178108404 E397 -S402 0.140913466459946 A371 -R393 0.139840739324702 A367 -R398 0.139657563724936 A381 -R393 0.139590689407904 A371 -R398 0.133628455459406 A371 -A383 0.127947132348656 L372 -L395 0.11924062017194 A366 -S378 0.117143443511616 A381 -W389 0.117092559710854 S378 -V386 0.115869374084814 S378 -A392 0.109365882348184 P379 -L395 0.10161816212137 S378 -L391 0.0986932957615245 E368 -G399 0.0961890181496101 L380 -L396 0.094411684038491 A367 -A392 0.0891470544621065 L380 -L395 0.083044958217954 E368 -R398 0.0779129474392599 V382 -R393 0.0754550039050736 P379 -F394 0.0750048970945998 A381 -A392 0.0687695346000843 A371 -A392 0.0648802846957059 V369 -G399 0.0620175980658919 D370 -S402 0.0588612236029631 C384 -L391 0.0587040679639053 A367 -L395 0.0571898912940867 L372 -A383 0.0544919793915259 A367 -L380 0.0502074101094014 A365 -A392 0.0478320555859209 A366 -A392 0.0477623982380384 A365 -A371 0.0468246198685627 V369 -A381 0.0443431833620362 C384 -A392 0.0400141100573681 A365 -E397 0.0398987857661339 G376 -Q385 0.0384686582374982 E368 -G376 0.0382290019536251 E368 -W377 0.0332177912159977 N373 -Q385 0.0321039153557692 S378 -L395 0.0308556232879322 A367 -S378 0.02849022569937 A371 -A381 0.0252652514538738 D370 -A392 0.0230954908086343 W389 -F394 0.0229300272363817 A371 -G399 0.0177551934355968 P379 -W389 0.0176322487977361 V386 -A392 0.0175038571333213 S378 -G387 0.0170395014934934 S378 -E397 0.0167324179650055 V369 -G376 0.0110175681804607 A367 -R393 0.0102371324858401 A367 -E397 0.00795760956957459 A371 -V382 0.00596862420394362 S378 -N388 0.00476329071899961 A367 -L396 0.00129721376106628 A371 -F394 -0.00394898323693704 N373 -A383 -0.00458644530736028 G387 -A392 -0.00504082146015428 A367 -N373 -0.00524514548584404 D370 -G399 -0.00574469837989833 E368 -S378 -0.00777945085224885 Q385 -L391 -0.00817886819328073 G376 -A383 -0.0120550726349729 E368 -N373 -0.0120555106877689 P379 -G387 -0.0129670106996427 G387 -R393 -0.0147574945684452 L372 -C384 -0.0148672165524553 E368 -L380 -0.0155605795634517 V369 -W377 -0.0166047344341775 G376 -V382 -0.0222469380429491 V382 -F394 -0.022466605908846 V382 -A392 -0.0236812638043229 A366 -G399 -0.0243262362142369 V369 -A383 -0.0257717109160758 D370 -V382 -0.0309692523118743 N373 -L380 -0.0313979255268168 A366 -P379 -0.0335999738686108 W377 -Q385 -0.0371163044467524 L380 -A392 -0.0379062911320556 V369 -C384 -0.0417234480706927 D370 -G376 -0.0450405444290221 N373 -V382 -0.0466295835359123 W377 -F394 -0.048169209843012 G376 -C384 -0.0495141363864171 L372 -F394 -0.0541213768385456 L372 -R393 -0.0556191017240308 A365 -D370 -0.0556867676777344 N373 -S378 -0.0564325595353081 A381 -F394 -0.0597695205338296 V382 -W389 -0.0601989320274736 A367 -L391 -0.0605946011456275 P379 -R393 -0.0622738047040015 P379 -L396 -0.0627281263392789 E368 -A392 -0.0686326449388753 N373 -F394 -0.0702729318482422 A371 -L396 -0.0713269175329598 D370 -A383 -0.0792047172073962 V369 -V382 -0.081720468928602 V369 -R398 -0.0832430030919671 A367 -L372 -0.0856027760542606 E368 -A381 -0.0911411164024929 L380 -L391 -0.0917998779447817 N373 -A381 -0.0924677527019583 S378 -F394 -0.0928933456461902 A381 -N388 -0.0929891270885385 W377 -V386 -0.0988517660375153 Q385 -A392 -0.0999853388333782 L372 -V382 -0.100141356600771 A366 -R393 -0.102443870455417 E368 -V382 -0.105388466073243 L380 -G387 -0.105518346332315 E368 -L391 -0.11090234156956 P379 -A392 -0.123571866333136 A367 -P379 -0.126400520617971 D370 -A381 -0.130547926953366 P379 -N388 -0.133601985845456 S378 -L396 -0.133714871780822 A381 -L391 -0.134989488111303 A365 -L396 -0.136274373605898 W377 -C384 -0.136745556566656 D370 -W377 -0.137847322217262 A371 -L380 -0.139819787637352 G376 -A381 -0.140491488398466 E368 -P379 -0.141394920598618 V382 -N388 -0.144728021970333 D370 -L391 -0.148178706629263 L380 -E397 -0.156035449670528 L372 -E397 -0.163313686643275 A383 -A392 -0.16412181452555 V382 -G387 -0.1689105483687 W377 -A383 -0.175101069962927 S378 -Q385 -0.17518828461909 N388 -F394 -0.175272734338701 L380 -F394 -0.179332890472864 V369 -L391 -0.185707271718091 V382 -L391 -0.189180171611692 V369 -A392 -0.189870038972766 D370 -S378 -0.196151869926736 A371 -E397 -0.208017788604096 P379 -V386 -0.208732199245774 A365 -R393 -0.210754096940534 L380 -N388 -0.227775958278258 P379 -L391 -0.23155860539896 A383 -R393 -0.240631768409976 A371 -L395 -0.251789541661452 A381 -G387 -0.253313564460815 L380 -W389 -0.258020385795033 A371 -G376 -0.260043035970826 A371 -S378 -0.263806686417595 L380 -V386 -0.299999814082055 L372 -A381 -0.302132702589591 D370 -C384 -0.303329358656632 V386 -L391 -0.304204037025057 P379 -E397 -0.319614433539294 E368 -L395 -0.399854442133559 A381 -V386 -0.401102484034233 S378 -A383 -0.429553326171677 L372 -L380 -0.446840584169028 A365 -F394 -0.447199584909086 A383 -N388 -0.485601215390537 S378 -C384 -0.503307837306833 P379 -Q385 -0.590319073403181