[Mon Aug 29 17:17:37 2016] >Input file: TMB2FUG9M1G.pdb >TM segments: 228-238_ 259-292 MAIDEN score = 10.4870 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- Q275 -Q285 10 L274 -L286 0.955083590398111 K271 -A292 0.896212047410532 V265 -L278 0.679986588442388 A266 -N279 0.606948289556077 H264 -L278 0.604141927021317 L276 -V283 0.532941508390251 A269 -L274 0.511527222353548 E270 -P291 0.484324319110026 V265 -L276 0.419069046639201 A263 -L278 0.381622523472214 A230 -A292 0.379086192205919 G272 -L290 0.372327456457586 L267 -L276 0.361322834795496 A266 -L278 0.360861442900698 L278 -V283 0.357132035939962 A273 -G288 0.342587531580418 L267 -L274 0.335760687708794 A273 -L286 0.321707873635998 A273 -S287 0.312603949541309 S231 -K271 0.300377790800902 L267 -Y277 0.286518757326756 A266 -Q275 0.274762635860355 L233 -G272 0.272804311152265 S231 -P291 0.270659105438292 E270 -Q285 0.248600766595218 A263 -R281 0.248158126328629 A269 -A284 0.240860901907316 L276 -A284 0.230032242641367 L235 -T268 0.225001008962066 K271 -E289 0.207532240345873 A273 -A284 0.202392520896954 L267 -V283 0.197020909651917 S231 -S287 0.186131002623053 T268 -L276 0.186068462494434 A269 -Y277 0.180234170916623 H264 -V283 0.179448215537382 G236 -L278 0.179043814312194 Y277 -Q285 0.173801470629352 E232 -K271 0.173591081492584 V234 -V265 0.172377876254065 L233 -S287 0.171917677401092 L276 -Q285 0.166400920562878 G229 -A292 0.162838507576212 G236 -V265 0.161470713182466 V234 -A266 0.156398234800628 E259 -N279 0.153614840981477 A273 -Q285 0.153258514312079 L267 -S287 0.152579276770574 S231 -G288 0.147026229830807 L233 -G288 0.146606497327803 I237 -V265 0.146355312138203 G272 -E289 0.145651344333054 E270 -E289 0.144081502095391 S231 -L290 0.143942483487038 L274 -A284 0.137125117177492 L267 -G272 0.136315744688378 T268 -S287 0.135660384480596 H264 -V282 0.135602113852981 G272 -A292 0.134011484094465 K271 -Q285 0.131213860473884 T268 -L278 0.130981453096474 G236 -Y277 0.129619730323391 G236 -L267 0.127687949469051 A273 -P291 0.125694991065681 L233 -L286 0.125344961714086 I237 -L267 0.12239344345288 L274 -L290 0.120401470170486 L233 -A292 0.117647936561591 W262 -L278 0.113827514799299 Q275 -G288 0.11321259714149 L233 -L276 0.108809905012208 L233 -T268 0.108514832297837 S231 -A269 0.107845195960789 Q261 -L278 0.107400500677034 G236 -A263 0.10657485575591 L276 -S287 0.10580418124457 G229 -V234 0.102526746151964 G236 -A266 0.102476125069821 A230 -P291 0.102032979178614 G236 -H264 0.10190200767839 K271 -L290 0.101348430184477 V234 -A273 0.100799866298588 E232 -E289 0.0986604937073353 L274 -V282 0.0981010794486543 A263 -L276 0.0973464522747199 L235 -Q285 0.0967640770700846 Y277 -A284 0.0950362741237174 E232 -G272 0.0922311461280803 H264 -A284 0.0868409927467448 A273 -E289 0.0830966543354048 Q275 -G280 0.0815142163346414 V234 -G288 0.0806597891796421 Q261 -G280 0.0793475704088978 V234 -Q275 0.0791251473829264 V265 -L274 0.0773214961326545 G236 -T268 0.0759642348945047 A269 -L278 0.0748732421947231 A266 -V282 0.0748235039540375 Q275 -L286 0.0745775773583501 G236 -L276 0.0722117040061607 A263 -V282 0.0697208098452249 A273 -V283 0.0678095351687587 V265 -A284 0.0672850442543527 L233 -A273 0.0656430033479429 E232 -G288 0.0650999133437613 L276 -R281 0.0643078171161431 L233 -E270 0.0638489249078178 T268 -N279 0.0611283045719651 L286 -A292 0.0596776347838319 E238 -E259 0.0589370044696653 V265 -Q285 0.0562335304336943 N279 -A284 0.0539183668821362 G260 -V265 0.0520916435676936 L235 -L286 0.0496117096396116 I237 -H264 0.0485734510263765 A263 -V283 0.0480634465959762 L235 -L274 0.0461367258607552 L235 -A263 0.0410412780539182 L278 -L286 0.0384743498874958 A269 -A292 0.038465682991951 V234 -A292 0.0381207497673959 S231 -G272 0.0376328018362768 A263 -N279 0.0370426062938334 L276 -G288 0.0367856239655939 L235 -A269 0.0362968385749785 Q275 -A284 0.0361704044208393 V234 -G272 0.0358017712547509 I237 -Y277 0.0348482679335271 D228 -L233 0.0322776943462963 L235 -A284 0.0287018641314711 L267 -G288 0.0263260048489866 L267 -L286 0.0208010807285737 I237 -G260 0.0181277828742434 Q275 -E289 0.0178803991772274 A269 -P291 0.0169913400114563 L235 -H264 0.0131708123177273 L274 -G288 0.012547509426037 G272 -A284 0.00906834587538352 G236 -E259 0.00620982238102541 T268 -V282 0.00336464407578752 A266 -A273 0.00266860086485998 I237 -A263 0.00245163335005816 L235 -S287 -0.000859884877277006 G236 -L274 -0.00263882063098031 A266 -L276 -0.0050378565272956 V265 -V282 -0.00787107207938043 L267 -G280 -0.00826695603167593 V234 -A269 -0.00868840122576486 E232 -S287 -0.00927111099249958 A269 -L290 -0.0114484873529941 A266 -Q285 -0.012028311737581 E270 -L290 -0.0127423677211476 T268 -Q285 -0.0170379639438013 W262 -N279 -0.0173955589200707 T268 -Y277 -0.0214273312632667 A269 -V283 -0.0219411623118471 G272 -G288 -0.0233658096913597 Q275 -V283 -0.0241323154469248 V234 -Y277 -0.0249182436157886 G272 -Q285 -0.027020114480576 G236 -Q275 -0.0274022053056763 Y277 -V282 -0.0292841305264693 L233 -Q275 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-0.0830262887232749 A269 -G288 -0.084051493432006 I237 -A266 -0.0841403560803773 L233 -K271 -0.0841946559818867 A266 -L286 -0.0849307964158772 E270 -Y277 -0.0853540988701607 L274 -A292 -0.0858282898721203 A266 -G280 -0.0860574996438812 D228 -V234 -0.0867634003112157 Q275 -S287 -0.0880244500605516 V234 -S287 -0.092011244908176 A269 -Q285 -0.0936336344407955 E232 -L274 -0.0946885602681276 L274 -Q285 -0.0960326855338582 T268 -L286 -0.0969528347256752 E238 -V265 -0.0999553910633928 E270 -G288 -0.10136588499483 L235 -Y277 -0.104851145924675 V234 -L286 -0.105405007631901 L274 -P291 -0.108284379633881 I237 -Q261 -0.109771965423042 S231 -E289 -0.112340305328596 L233 -L267 -0.115166934516958 H264 -Q275 -0.124667520332038 H264 -Y277 -0.125240886354584 L274 -S287 -0.128235350979074 L233 -A266 -0.129705293124734 H264 -R281 -0.129787653194383 T268 -A273 -0.131342741258754 L267 -N279 -0.132260826268842 K271 -L286 -0.13265741536109 L267 -Q275 -0.13370083139416 E238 -L276 -0.133772398598353 E259 -H264 -0.134971277435415 N279 -Q285 -0.135833462506082 T268 -A284 -0.139620655144387 I237 -L278 -0.141099640551901 E232 -L290 -0.144801189101816 E270 -V283 -0.145101774369155 H264 -L276 -0.146201672322258 W262 -R281 -0.147683424884146 L274 -V283 -0.152989778914243 V265 -R281 -0.153622467497916 L278 -Q285 -0.155696750627087 L235 -Q275 -0.155875648131975 I237 -E259 -0.156502431780033 E232 -L267 -0.159692389816075 V234 -L276 -0.159810331395197 A273 -L290 -0.160687375909825 E238 -L278 -0.162580090706463 V234 -L267 -0.165529053728039 L233 -E289 -0.165755730357772 H264 -N279 -0.167993850034733 V234 -K271 -0.168899081074782 K271 -S287 -0.171552675375966 A273 -A292 -0.172698635892269 E270 -A292 -0.176393460227767 A266 -A284 -0.185042466037936 H264 -G280 -0.186397655197016 E259 -V265 -0.190772596487938 V234 -L274 -0.192542673436933 A266 -Y277 -0.197501826429872 S287 -A292 -0.197619445019988 T268 -V283 -0.203861775680365 L267 -A273 -0.20505272912139 T268 -Q275 -0.206705657665756 L235 -L278 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