[Fri Aug 26 17:37:28 2016] >Input file: TMB3G3Z3M10D.pdb >TM segments: 19-38_ 57-73 MAIDEN score = -15.9487 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- S32 -C58 1.03552346597506 L36 -C58 0.803732151796178 V29 -I62 0.710533010487479 I35 -C58 0.687062973671683 F24 -C65 0.666189811704889 S32 -S61 0.635299735040555 C65 -I70 0.621096005339242 I27 -S32 0.615829082128934 A28 -I62 0.611186409712648 L36 -I59 0.533759415598356 C33 -I62 0.488558505951344 A28 -S61 0.450578931680229 S21 -Y72 0.430372264818359 S19 -Y73 0.398959753133889 F30 -I35 0.382509221029838 L31 -C58 0.380084179252297 V29 -S61 0.374411334645928 A25 -I69 0.356146443878 V29 -C65 0.340082894062073 G22 -Y64 0.323043209485725 I66 -N71 0.304369334648719 A25 -I66 0.300177655312533 S32 -I62 0.270109519388837 S21 -I70 0.269592444863296 M34 -C58 0.265584592059783 C63 -N71 0.265374845113473 G22 -Q68 0.249185486838967 S21 -Y64 0.24882286771792 Y64 -I69 0.245833239297849 T57 -C65 0.223988147166245 A25 -I70 0.205821871466815 C33 -I59 0.201715770628287 C58 -I66 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