[Mon Aug 29 17:41:23 2016] >Input file: TMB3H5T8M1G.pdb >TM segments: 280-313 MAIDEN score = -9.0742 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I287 -M292 0.41809398941728 R284 -C289 0.313089699470038 C289 -K298 0.312552312857307 G295 -G303 0.276690978974264 L286 -S291 0.24788792404811 L288 -G295 0.237811424960678 K298 -S306 0.227463783583761 L286 -G293 0.22247216557446 S283 -M292 0.186211927474635 G293 -G303 0.18376350079809 G295 -G302 0.162253409572003 G303 -V311 0.156414464718344 R284 -S291 0.147946978026934 C289 -F294 0.132610038836275 I285 -S291 0.125080349614111 I287 -G295 0.115327876581435 V282 -V290 0.108641176110806 T300 -V308 0.101170731075943 T305 -G312 0.0985126246436014 V290 -K298 0.0978071936238778 L301 -V308 0.0946217646315057 L301 -L310 0.0908956143952082 G302 -L309 0.0868964674121617 M292 -T300 0.0793226976323542 L288 -V296 0.0772508053519461 G293 -G302 0.0760658855978406 L288 -G293 0.0741087079114626 T281 -V290 0.0660416586317414 I287 -V296 0.0528340418814963 L301 -L309 0.0522362575609585 K280 -I287 0.0514117144880517 V308 -V313 0.0496894140704001 K298 -T305 0.0478564775320418 G303 -G312 0.0467957031650288 G303 -V308 0.0456570416387265 V290 -G295 0.0441851244839029 G293 -L301 0.0426247036422231 C289 -G295 0.0273932179506611 S291 -V296 0.0253327435583701 T305 -V313 0.0232125472621179 V297 -T305 0.0188457600587371 S291 -S299 0.0107200909461236 S306 -V313 0.00969252154409617 G302 -K307 0.00708849100042741 G302 -L310 0.00404661173145904 S291 -K298 0.00116950813602434 L304 -G312 -0.005566262455589 F294 -G302 -0.00563733183752246 L288 -V297 -0.0120687032967446 S299 -K307 -0.016219599878026 S291 -T300 -0.0163510224906238 L304 -V313 -0.0175207559470172 F294 -L301 -0.0212584627630372 S283 -S291 -0.0244768059974012 T281 -L288 -0.0250979874486554 T300 -T305 -0.027301459029923 T305 -L310 -0.0340325261543395 I287 -F294 -0.0346523162233323 V282 -L288 -0.0370992150464646 V290 -S299 -0.038249721642635 I285 -M292 -0.0385463647499465 L286 -F294 -0.0448115356903784 S283 -G293 -0.0461601394439555 G295 -L304 -0.0478764216735188 S306 -V311 -0.0493908623938784 V297 -S306 -0.0497581551569346 G293 -T300 -0.0534301693079353 V297 -G302 -0.0618769679507807 G302 -V311 -0.0732702471293587 M292 -L301 -0.0807769697964806 F294 -G303 -0.0842034052244482 T300 -L309 -0.0933133588071466 G295 -L301 -0.0947159337200913 M292 -S299 -0.0969846400024832 I285 -G293 -0.10287933893491 S299 -V308 -0.108215827603385 V296 -T305 -0.110413258501556 V296 -G303 -0.113455669736518 V282 -C289 -0.113661794853707 T281 -L286 -0.117393919961652 K298 -K307 -0.126608737480387 G302 -V308 -0.128835839699078 T281 -I287 -0.134583181146711 M292 -K298 -0.135391349733644 G293 -S299 -0.146982700098387 K280 -L286 -0.149635191699078 V296 -L304 -0.151376844277288 C289 -V296 -0.15156770316442 S306 -G312 -0.152100267850647 S299 -S306 -0.152122731669489 G303 -L310 -0.152256246693505 R284 -V290 -0.158968809762631 V296 -G302 -0.161071080918523 V297 -G303 -0.168948992413981 R284 -M292 -0.174603302584396 L301 -K307 -0.181831152087675 I287 -G293 -0.18989963139074 L288 -F294 -0.191612210495651 K280 -I285 -0.193073378284154 L304 -L310 -0.195181161946546 C289 -V297 -0.196631472383838 S283 -L288 -0.200301320891517 T305 -V311 -0.203854486139339 V297 -L304 -0.217280295752225 S299 -T305 -0.225677204021897 T300 -S306 -0.227323469494622 K307 -V313 -0.230127434076032 K298 -L304 -0.239744972166253 L304 -V311 -0.257979777901467 I285 -V290 -0.258280382505486 F294 -S299 -0.259668982328508 T300 -K307 -0.269274620204244 K298 -G303 -0.276300024499791 G293 -K298 -0.277792519296905 K307 -G312 -0.279223553734033 V282 -I287 -0.291266848209613 L286 -M292 -0.296897837573519 M292 -V297 -0.313182600379221 V290 -V296 -0.337132260590157 G303 -L309 -0.346118250710438 L301 -S306 -0.347947710805751 V290 -V297 -0.348805238877845 S283 -V290 -0.351733228573623 S299 -L304 -0.357738539162462 G295 -T300 -0.358318176374038 S291 -V297 -0.366570677409491 V296 -L301 -0.374719540363781 L304 -L309 -0.419001463753633 F294 -T300 -0.464136077732341 S283 -C289 -0.465673090874104