[Mon Aug 29 17:43:20 2016] >Input file: TMB3JG40M2G.pdb >TM segments: 584-590_ 621-653 MAIDEN score = 1.6441 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L637 -M642 1.20729763477961 L636 -P643 1.11775886528726 L636 -N645 1.03153389091437 F633 -S649 0.9364952539459 V635 -S647 0.854661104360977 L637 -L644 0.844755234739489 V590 -Q631 0.738997001024751 L636 -L644 0.720871521423136 V635 -K646 0.606908091239443 A628 -F633 0.60191461601233 F633 -Y648 0.574135213122066 V635 -N645 0.523081635326963 V590 -Q622 0.495637827422407 Q622 -Y648 0.474384121851737 A630 -Y650 0.452083863007215 F633 -Y650 0.445035029898213 K625 -P643 0.435963539370377 F633 -S647 0.399214206829787 Y634 -D651 0.397162532592471 Y634 -Y650 0.357585549819964 G627 -Y634 0.352740814664249 Q631 -Y650 0.349537662414641 K625 -S649 0.333433158214248 R623 -Y648 0.294052915377891 L636 -S647 0.271169550302587 K625 -A630 0.258459430994936 Q622 -G641 0.23840174962913 F626 -Y650 0.220717356131454 L637 -K646 0.215662371874323 S624 -P632 0.21009475695025 A628 -K646 0.205692411572045 Y589 -N629 0.203105805935689 F633 -D651 0.194184179919338 Q622 -P643 0.190986017320167 V635 -P643 0.190935039852726 G627 -Y650 0.189893415187402 F633 -N645 0.178955630546766 F626 -Q631 0.177508417191291 S624 -A630 0.176791894772339 S624 -M642 0.176425630076467 Y589 -S624 0.176337968334668 G627 -P643 0.173578292688089 N629 -Y634 0.165842779091417 N639 -L644 0.163768632778409 L637 -S647 0.161837240652414 Y634 -K646 0.161518284494301 K625 -L637 0.154904065538894 L588 -Q622 0.151488869795949 F626 -S647 0.150012990623983 R623 -S647 0.14704458794954 V635 -G641 0.142667385361158 L588 -P632 0.138999694328355 S624 -P643 0.137627177550871 V635 -D651 0.133012899470885 P632 -S649 0.131875890350614 L636 -Y650 0.127677548994037 I586 -Q622 0.125215394612375 Y589 -G627 0.125009158969402 T587 -Q622 0.124647962087277 K625 -K646 0.123900503932711 Y589 -A628 0.122470926727444 V590 -F626 0.11908762292521 Q622 -N629 0.118644380884518 T587 -Q631 0.118076113794155 F626 -N645 0.115746689096523 A630 -S649 0.11506040537455 L636 -S649 0.1145257027071 V584 -Y634 0.10941172922767 A630 -V635 0.109381798167283 M642 -Y648 0.10804828571891 K646 -D651 0.107104521244393 Q622 -S649 0.106453651298639 N629 -Y648 0.105937194726035 P632 -D653 0.105388427378052 L621 -L637 0.104405284444746 Q622 -M642 0.101490245236783 I586 -G641 0.101349679419502 V584 -M642 0.0972783207404468 R623 -P632 0.0969991883328647 Y634 -M642 0.0958380227613 L588 -L637 0.0941201975616939 N629 -D651 0.0922087644028862 S624 -F633 0.0914886514161175 D638 -S647 0.0902703457015799 V590 -S649 0.090161374196696 A628 -S649 0.0864588864012186 S624 -Y648 0.085650091604986 Y589 -L621 0.0834412176279384 Y634 -L644 0.0826101393142524 L621 -M642 0.0818514021582217 L637 -P643 0.0797108651279896 L585 -N639 0.0794483330633717 L621 -V635 0.0754548959486443 Q631 -Y648 0.075398256861766 Q622 -G627 0.0743312098639848 R623 -S649 0.0742805292842748 F626 -L644 0.0738013537235944 V590 -Y650 0.0734689392558838 N645 -Y650 0.0714754712875276 I586 -M642 0.0658889250382 L588 -A630 0.06588293863579 K625 -G641 0.0652325408511469 P632 -E652 0.0630694507805813 Y589 -A630 0.0605459111676465 Q622 -Y634 0.0598013029495066 L585 -P643 0.0593878071053151 V590 -Y634 0.0584485527496938 S624 -V635 0.0584401270352903 G641 -K646 0.0580351951094635 Q622 -A630 0.0555220654056312 L585 -D638 0.0551646860277275 L588 -F626 0.0528843198657825 L621 -P643 0.051992845246307 A630 -S647 0.0498835122594219 F633 -D653 0.0494308853645826 R623 -N629 0.0484363177462281 L636 -Y648 0.0464745394326656 E640 -N645 0.0437492178575289 P632 -D651 0.0406955729487146 L588 -A628 0.0401234170904572 A628 -P643 0.0388488018147122 Y634 -G641 0.0333316975670588 L637 -N645 0.0321977637653215 R623 -P643 0.0299620623751427 A630 -D651 0.0257151985501709 V590 -K625 0.0247508696297631 K625 -V635 0.0241891258932267 K625 -S647 0.0233926761171609 S624 -S649 0.0216895612934453 V584 -G641 0.0214356111564178 K625 -F633 0.0202064396121693 V590 -G627 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