[Fri Aug 26 17:54:01 2016] >Input file: TMB3QTF8M1D.pdb >TM segments: 656-667_ 679-706 MAIDEN score = 9.3936 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V689 -L695 2.64255910533479 P685 -P702 1.48110090426391 V684 -P702 1.44967540295931 L686 -I699 1.12980476468702 G683 -L701 0.934497346918844 P685 -L701 0.754898387752264 L686 -P698 0.7479085382249 L686 -V700 0.742170475101234 V689 -E697 0.722605590576852 F690 -L695 0.696250743824563 V684 -E703 0.64686453945527 Y687 -L695 0.635584762527618 V684 -L701 0.589357800316627 Y687 -V700 0.570502124284388 V688 -L695 0.54930875390734 I699 -V704 0.548736475132174 N667 -V684 0.464316309861672 L656 -R662 0.440216397182696 P685 -I699 0.417344983739939 V684 -V700 0.414077919231242 L686 -E703 0.392571874606285 P685 -E697 0.388564056282719 P685 -P698 0.37803928462387 N667 -P702 0.348406919494206 F690 -S696 0.326510095783433 P685 -V700 0.321404770123373 V688 -E697 0.314512306762524 P685 -T706 0.290652472896775 D664 -V684 0.276388521981143 N667 -E703 0.276050308858626 Y687 -I699 0.274953212013406 N667 -G680 0.26995212876783 L686 -V704 0.262306542416639 N667 -P685 0.249550020509833 P660 -P691 0.234244734440711 P660 -P698 0.232511125032367 V688 -S696 0.230282266418196 Y687 -E697 0.227339768752049 P660 -L686 0.217826065674691 D664 -V689 0.213529077333214 L656 -I661 0.20592244039123 P685 -V704 0.204209475888508 G683 -I699 0.200207220659158 R681 -V700 0.195951680299943 S682 -L701 0.195945730907451 V689 -S696 0.195176190068333 N667 -L701 0.193797902852422 V689 -I699 0.192396095077255 G680 -L695 0.179585314379062 S682 -P698 0.177570722138245 S682 -Y687 0.177146891480347 Y687 -S696 0.152852115549672 V688 -V704 0.151196217331612 L656 -Y687 0.146629424565392 P660 -G693 0.140146433094224 E697 -E703 0.13806507535592 G680 -P698 0.132284271349272 V689 -V700 0.128973369562775 V688 -I699 0.126313301703521 T666 -S682 0.117493406473948 A663 -G693 0.115901464691137 T666 -G683 0.115241604222247 W665 -Y687 0.114339872619067 I661 -G693 0.112357792750594 T666 -V688 0.109454494677831 T666 -V700 0.10867474244429 G657 -V688 0.108416272121021 A663 -P698 0.105674560822369 Y687 -V705 0.100037633326124 T666 -P685 0.096824078770803 L686 -E697 0.092381385186987 F679 -V688 0.0914275845418775 F679 -L695 0.0895328033598934 G683 -P698 0.0882350910358809 D664 -P685 0.0871622830352322 R662 -P691 0.0852330511707193 G680 -Y687 0.0844149572546069 G683 -V705 0.0842694280002744 S682 -E703 0.0826871177826929 R681 -L695 0.0812286834288621 V688 -V705 0.072332483512672 G680 -E697 0.0700314981070136 L656 -L686 0.0656870439539632 N667 -V700 0.0607863123569725 F679 -F690 0.0585311178549079 V659 -P691 0.0573337925059167 P660 -A692 0.057296334060954 G683 -E703 0.0572913704626236 I661 -P691 0.0570387945949267 I661 -L686 0.0517551745481815 G680 -V688 0.0516509286909431 I658 -V688 0.0514702452452287 T666 -R681 0.0511871029408502 W665 -G693 0.0489998458789718 P660 -V689 0.0456629071021277 N667 -F679 0.0455506748880211 L686 -S696 0.0442817105857294 A692 -P698 0.0332451779463199 F690 -P698 0.033025577490941 F679 -P698 0.0301935885231259 F679 -L686 0.0279286310534297 F679 -P685 0.0244672529855974 A663 -P685 0.0238726093347692 N667 -Y687 0.023195556467233 G657 -L686 0.0211409516361951 W665 -V684 0.0201794342623057 R681 -Y687 0.0170496719112845 R681 -I699 0.0120951385362975 P660 -S696 0.0115183172200597 W665 -S682 0.00896754884308937 P698 -V705 0.00895437413552602 L695 -V700 0.00800884844393401 P660 -L695 0.00647407266820732 L701 -T706 0.00480214441819693 G657 -Y687 0.00445535619138226 R662 -P685 0.00323526532307516 A663 -P691 0.00265239799620298 F679 -V684 0.00235742392561367 G657 -F690 -0.00295829011207305 V688 -P698 -0.00403754597493444 L656 -D664 -0.00446469660830751 T666 -L701 -0.00744486350540363 G683 -V688 -0.00871022516144215 G680 -I699 -0.0102907114802098 R662 -F690 -0.011506055446753 G680 -L686 -0.0126653200420366 G683 -V700 -0.0127214759924499 W665 -I699 -0.0134922620494735 S682 -I699 -0.0139546108357764 F679 -G693 -0.0161654787112098 Y687 -E703 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