[Fri Aug 26 18:03:13 2016] >Input file: TMB3VZY7M3D.pdb >TM segments: 51-79_ 87-121 MAIDEN score = -25.2979 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I61 -S99 1.20446007493076 L55 -Y107 0.682560852740469 Y66 -T71 0.594651453580227 N58 -A103 0.519848227508787 L87 -R92 0.441922664486592 Q70 -Y94 0.441557410922967 V109 -R114 0.430944211396997 M69 -L95 0.413593996709015 L55 -V109 0.400843511282832 S62 -S99 0.400567963982212 V64 -L95 0.399232842718823 H53 -S113 0.39780513546517 I65 -R92 0.384785531025999 H53 -S106 0.368533080851387 H53 -Q110 0.35270259690637 Y66 -V98 0.351332494176627 L55 -S106 0.350920122211408 C57 -F108 0.347962086844294 I61 -A103 0.335926699956636 T68 -L95 0.323206806340923 S63 -A96 0.320759885271162 H53 -N58 0.31370711475798 I61 -V100 0.293526646480156 T71 -C89 0.287487182321408 Y105 -Q110 0.282677859600518 T59 -T104 0.281527469409591 T59 -C67 0.281425066614189 V64 -S99 0.2809741151876 Y74 -R92 0.2743529966098 M69 -A96 0.261045495132774 R52 -S113 0.259041022818328 Q110 -S118 0.250243530742174 I65 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