[Mon Aug 29 17:56:55 2016] >Input file: TMB4SIG8M1G.pdb >TM segments: 323-335_ 367-395 MAIDEN score = 10.7589 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V382 -I388 10 F381 -I388 1.1985071357092 F371 -H391 1.06033604190413 A378 -E395 0.943262065605964 Y380 -I388 0.88192724110629 Y375 -F393 0.835833841528935 R323 -V328 0.820110018868427 R323 -V329 0.814449839487094 V382 -G390 0.680072713839553 Q379 -H391 0.621566512796855 W376 -G394 0.615964318495455 P377 -F393 0.537531995073 N373 -F393 0.510405033891638 R374 -F393 0.506245150563514 I367 -N372 0.458504626060986 A378 -H391 0.429916821899067 R374 -G394 0.372627917487554 W368 -P377 0.363001417270327 F381 -Q392 0.344391973772035 Q379 -G394 0.317432468530861 P335 -N373 0.316731479398765 R323 -Y380 0.309970820120589 P377 -Q392 0.28635857357563 N373 -A378 0.269564420102417 N372 -G394 0.26606857103347 D324 -D383 0.249809296829073 P377 -H391 0.245278811303051 T334 -W368 0.243131091964244 H333 -P377 0.24154165262802 N373 -Q392 0.230239982905053 R369 -Y375 0.2254446087274 R369 -Q392 0.208302622439189 H333 -A378 0.198487237485401 T334 -N372 0.197036925651037 N373 -Q379 0.196400037012558 N372 -G390 0.195964025005955 G386 -H391 0.194034545803716 G326 -F381 0.193686145671147 H333 -Y380 0.19230784752743 W368 -Y375 0.190766565555048 F381 -H391 0.188276991601228 W368 -Y380 0.186594132930662 A370 -H391 0.183962082034729 Y375 -Y380 0.176059758656273 A378 -F393 0.176055130775203 I367 -H391 0.175826977437482 P335 -W376 0.173575847259584 D383 -R389 0.165988047408046 I367 -A378 0.163345131374394 R323 -Q392 0.148729642643956 T334 -I367 0.148172808350881 I367 -I388 0.137602556849144 F381 -R389 0.134562604334761 N372 -Y380 0.134536927995899 P335 -R369 0.133389445285697 W376 -E395 0.127303864888587 R323 -D383 0.124731826455415 Y375 -H391 0.123775848628984 Y380 -E395 0.122207143111323 V332 -I367 0.120995385570695 R374 -Y380 0.120869068308401 H333 -W376 0.117845459306883 Y380 -R389 0.113410873030067 W368 -H391 0.112559574631863 H333 -A370 0.109856812050356 L327 -Q379 0.108499305089135 N372 -R389 0.108438004592709 G326 -A384 0.106392446283644 H325 -D383 0.106334502273905 R369 -R374 0.105940351966463 P335 -P377 0.105333503835547 R369 -A378 0.104786036167133 G331 -F381 0.104749525100889 D383 -G390 0.103430266753284 A378 -G390 0.102001250486275 V328 -G386 0.101702766874313 V328 -Q379 0.10095395115073 T334 -P377 0.100396791262328 N372 -P377 0.0932911254289381 R323 -G331 0.0904720731511703 F371 -F381 0.0903314565199653 L327 -R389 0.0859990251351566 I330 -G386 0.0849432251968194 G331 -A378 0.0847765633455397 A370 -Y380 0.0842431444638583 W376 -H391 0.0838204784991525 I367 -N373 0.0831553754757497 I367 -Y375 0.0810399890297466 R369 -Q379 0.0809623153030583 N372 -Q392 0.0795846100892301 A378 -I388 0.0792670859584783 Q379 -R389 0.0777190894687525 P335 -Y375 0.0773014447688323 F371 -G394 0.0705919362622653 G331 -I367 0.0691388475943961 Y380 -H391 0.0686745332207344 T334 -F371 0.0679262085604533 Y375 -E395 0.06603302366582 L327 -I388 0.0648828786355793 T334 -R374 0.0648052813320128 I367 -N387 0.0644910100455505 A370 -G390 0.0621753945909971 G331 -H391 0.0601162209162656 Y380 -Q385 0.0568082096260767 V328 -Q385 0.0567759121087117 I367 -G390 0.0566927402443325 Y375 -G394 0.0560826566977819 A370 -A378 0.0554085552019181 I330 -H391 0.0538642793887207 V382 -N387 0.0513496392021455 I367 -Q392 0.04927126308226 R369 -Y380 0.048568029416475 A370 -F393 0.0473676838435795 A370 -N387 0.0458443300301936 R323 -V382 0.0446479735465037 I367 -F393 0.0440997963345513 I388 -F393 0.0438260835447366 R369 -F393 0.0437831679373417 F371 -F393 0.0410578536301429 V329 -A384 0.0376865419247521 I367 -Q379 0.0368660481326256 G331 -Y380 0.0366184484298092 W376 -F393 0.0356701819851937 G331 -V382 0.0338176486959565 V332 -P377 0.0328537128661464 V332 -N373 0.0323639795438697 A370 -I388 0.0321670337532947 F371 -G386 0.0314116050028517 H325 -I330 0.0306472661848767 I367 -R374 0.0299945736627403 F381 -F393 0.0295525635482461 T334 -G394 0.0280834846721345 V332 -G386 0.027760440915428 W368 -I388 0.0277053205357856 W368 -G390 0.0263909123623927 V382 -Q392 0.0260144604206403 L327 -G386 0.0259830528742775 F381 -G394 0.0245373685134531 R374 -Q392 0.022852576896526 D383 -H391 0.0220100637323242 V328 -Y380 0.0197180088203521 G331 -P377 0.0192238266518125 L327 -V332 0.0174454729306395 H333 -Q379 0.0173715853762342 A384 -G390 0.0171064041420929 G331 -Q392 0.0163869623608206 R323 -F381 0.0127964931967814 Q379 -F393 0.0120961297722459 W368 -F381 0.0104858651398625 I330 -A384 0.0100781212032572 Q379 -G386 0.00848630646058135 P335 -A378 0.00819335609892569 P377 -E395 0.00817649735903325 V332 -I388 0.00765473298064379 P335 -F371 0.00744412721405863 R369 -I388 0.00733986445404256 R374 -G390 0.00545507429193748 Q385 -G390 0.00523511899540452 V332 -Q392 0.00439401094700331 F371 -W376 0.0043176639284499 N373 -G390 0.00404914307800119 G326 -D383 0.002991078394316 L327 -Y380 5.78758982960892e-07 A370 -Q379 -0.00222317289935092 L327 -V382 -0.00375201964273231 A370 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