[Mon Aug 29 18:11:34 2016] >Input file: TMB6RIT9M1G.pdb >TM segments: 362-375_ 383-408_ 485-493 MAIDEN score = 43.3391 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- A393 -D401 10 H388 -N394 10 K362 -C407 10 T364 -I405 2.32600825651435 K386 -K398 2.08777532536739 K374 -K391 1.96786968879042 A393 -Y400 1.37945075999149 K386 -M399 1.15905699224874 L365 -I405 1.12372423222484 W366 -F392 1.06389884167776 W366 -A393 1.04584451969487 V367 -F402 0.979371660809697 W366 -F402 0.971445998341162 K374 -F387 0.965510586437951 H388 -D395 0.953263580797184 F387 -F392 0.911244355140899 L365 -F402 0.898447713917164 K362 -W408 0.74917470943448 A393 -M399 0.67061254180147 A384 -N394 0.636873794845661 T364 -F402 0.63492533423849 G363 -C407 0.62314447514415 G375 -F387 0.618977783855398 V367 -F392 0.614465243057445 V372 -Y400 0.60622371970583 K391 -Y400 0.584776703911442 N394 -Y400 0.555092654309982 K374 -Y400 0.53496349056056 T364 -D401 0.529576135753966 F387 -Y400 0.515104236614413 A393 -F402 0.504984725704611 W366 -N394 0.496687190753603 A373 -Y400 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