[Fri Aug 26 18:25:53 2016] >Input file: TMB6RIT9M3D.pdb >TM segments: 872-879_ 881-892_ 965-973 MAIDEN score = 0.2141 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V877 -T884 1.44531227701505 I876 -T884 0.615741120440486 V877 -I888 0.550193277165586 R879 -G885 0.40586050815096 I876 -M887 0.39462784671735 V875 -T884 0.333641998098612 R965 -N970 0.309146300296779 S878 -N886 0.263263292770453 R879 -M887 0.256903677905926 S878 -G885 0.230325020605018 H873 -T884 0.211226983073002 I876 -T890 0.194889915339814 G872 -M887 0.180513023156116 F883 -T890 0.167556604982644 R879 -N886 0.154353124331154 H873 -F883 0.141693748430833 I876 -N886 0.139049959081316 H873 -T890 0.134815657717272 G881 -I888 0.12357963115722 V875 -D882 0.111641679336533 S874 -A891 0.107644535844907 H873 -I888 0.097972770543554 S874 -T884 0.0878303203202444 D882 -I888 0.0865232127275102 S874 -T890 0.0861052857035882 V875 -N886 0.0743152159334708 S878 -D889 0.0528412908669932 H873 -G885 0.0514321042702994 S874 -G885 0.0413782004540917 V875 -A891 0.0410489969334602 V877 -F883 0.0384072710776362 R879 -D889 0.0328594639173483 G885 -A891 0.0315272432363853 T884 -A891 0.0301260723549246 S874 -D889 0.0280477771263374 H873 -D889 0.00933588502268634 V875 -F883 -0.000536509853096945 V877 -M887 -0.0197795245725789 I876 -I888 -0.0228528210520293 S874 -N886 -0.0264240856254652 R879 -I888 -0.0325290976158106 V875 -I888 -0.0340238774565735 V875 -T890 -0.0366372937712338 G872 -T890 -0.0488328728955102 V875 -D889 -0.049969251532251 G872 -A891 -0.0609326551411585 N886 -P892 -0.0634945373154183 M887 -P892 -0.0641632802610945 G872 -P892 -0.0677438788591205 S874 -F883 -0.0677939378106018 N886 -A891 -0.0700531426221196 V875 -G881 -0.0765290349962484 V877 -T890 -0.0777452474258653 G881 -D889 -0.101984358844779 T884 -T890 -0.103151092218673 S878 -M887 -0.108216477319033 R879 -T884 -0.110495502988136 G872 -I888 -0.119992172519484 I876 -D882 -0.121043362905272 T884 -D889 -0.127840373720475 F883 -I888 -0.130898215256695 D882 -T890 -0.132951015801449 G881 -M887 -0.134105279493109 V875 -M887 -0.139971749078325 H873 -A891 -0.14625176337414 V877 -N886 -0.148481294337972 S874 -I888 -0.150731611748435 S878 -I888 -0.151034889822975 G885 -T890 -0.153521479815483 V877 -D882 -0.153860370528848 S874 -M887 -0.160879164942781 I876 -D889 -0.162762451113759 I876 -G885 -0.163322132765762 V875 -G885 -0.173730362386785 D882 -D889 -0.179111068490728 G881 -N886 -0.181634122430133 S878 -T884 -0.185674398400104 D882 -M887 -0.207861904233951 I876 -F883 -0.209595030060619 I876 -G881 -0.209993619341573 V877 -D889 -0.22014643559138 H873 -N886 -0.222131947814129 F883 -D889 -0.273531645563919 H873 -M887 -0.285013455699291 S878 -F883 -0.290730864795209 H873 -P892 -0.309173915455446 V877 -G885 -0.557720186968327