[Fri Aug 26 16:42:18 2016] >Input file: TMB7PMH5M2D.pdb >TM segments: 51-70_ 83-118 MAIDEN score = -15.6387 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L69 -L88 0.84235666594801 L102 -L107 0.802115901882617 L101 -L106 0.676991109325659 L61 -L66 0.655032015772801 L66 -Y89 0.641416873646712 L104 -M109 0.598984871778568 F93 -D98 0.528208716928991 Q68 -P87 0.473288852426372 P62 -F93 0.472547656208039 L66 -F93 0.459692265742984 D98 -V103 0.437808832509111 P62 -E86 0.367741608537667 L100 -P105 0.328964171794023 M60 -D98 0.282979300096668 W84 -T94 0.273313397700343 P62 -Q70 0.254837922431677 P62 -L69 0.249087485227813 R91 -D98 0.246953274226859 S56 -P62 0.246951089779949 S67 -L92 0.236794406148547 P87 -L92 0.229490401886724 S67 -E90 0.226779581624115 L57 -P62 0.22269624526461 P105 -T110 0.214530899534604 S67 -L88 0.212178832101715 L104 -T112 0.209133574483206 P62 -L97 0.206407874723984 Q68 -E90 0.206385244003886 A64 -E90 0.192115912506273 L61 -S67 0.180830879200704 D83 -R91 0.169198594395707 L69 -Y89 0.16300181868947 D83 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