[Mon Aug 29 17:10:07 2016] >Input file: TMB7RKZ0M1G.pdb >TM segments: 425-439_ 535-564 MAIDEN score = -5.1465 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- E428 -I434 1.30584575614152 Q427 -I434 1.02204437621714 S429 -I434 0.761205853474111 V425 -R432 0.585821728221763 L542 -E563 0.476642080759289 I538 -R544 0.448683540667369 E535 -T562 0.445186929533154 Q539 -T562 0.443638597177681 Q433 -K549 0.421348627367436 H556 -M564 0.419280018306141 V425 -R431 0.412068385131942 M546 -V551 0.349811730288259 V425 -L430 0.324762021218049 A555 -T560 0.271695243577019 L542 -G548 0.270872114862233 L558 -E563 0.269189924545641 Q539 -S559 0.260694295724945 Q539 -E547 0.258105724644787 H540 -T562 0.248527392101058 R544 -M564 0.247046235685956 T543 -L561 0.239072805487612 R544 -E563 0.225320928617552 A541 -S559 0.216407398950371 E535 -T560 0.213229022468532 E535 -T543 0.210697718717934 H556 -T562 0.210361411762791 R557 -M564 0.206575347709452 T426 -G435 0.205487600841026 A536 -S559 0.1844180787181 M546 -S559 0.177304903727727 A553 -M564 0.170736040276038 L430 -G435 0.168436001757684 E535 -A555 0.161060686111122 H540 -T560 0.160978777031549 V545 -E563 0.153495977217432 R544 -K549 0.151289428436508 Q539 -R544 0.149876445529836 L552 -S559 0.149851094255969 A536 -R557 0.148018921370831 V437 -M546 0.14625765911644 T543 -E563 0.144385555675891 E535 -H556 0.142193252843756 A536 -R544 0.140820866622874 G548 -M564 0.140438588935558 V437 -V545 0.140063249311378 I538 -L561 0.137985428680114 I538 -M564 0.135616469802535 K549 -E563 0.134098201648202 A536 -A555 0.133400086136953 L552 -L561 0.132354961871936 T426 -R432 0.130779581227533 G435 -M546 0.127518687886075 H540 -L561 0.125995203126039 V545 -M564 0.12346885804209 I434 -A553 0.121480645602236 T550 -E563 0.118325762241995 I554 -T562 0.11757424747991 R544 -T562 0.117279601037668 G435 -G548 0.116632856059014 A541 -L561 0.112285139892512 I538 -T543 0.112185376348164 S537 -V545 0.111782826407185 L542 -S559 0.110324140057997 T438 -I538 0.103218031785888 A536 -T560 0.102195355287755 A541 -T562 0.102013313476742 T438 -A555 0.1013966890753 G435 -T550 0.0995720363098369 G435 -K549 0.0990334698319523 Q433 -V551 0.0972880453456213 M546 -A553 0.0942245106097657 L542 -L561 0.0931885587021144 Q433 -L552 0.0911180168908112 S537 -M546 0.0901845272574362 I538 -M546 0.089962495646942 Q539 -H556 0.087811354790019 I554 -T560 0.0834616505033079 M546 -T562 0.0833669307501355 S537 -T560 0.0833567013418109 S537 -E563 0.0769419388142207 V425 -I434 0.076788854563266 M546 -I554 0.0763697885928192 G435 -A553 0.075958680306325 V545 -T550 0.0756187272194315 S537 -R544 0.0750967199038267 M436 -T550 0.0749670369841298 I434 -M546 0.0736380049848093 A536 -L561 0.0731032690516216 H540 -E547 0.0698943590695231 L542 -L558 0.0691394441380364 R544 -T550 0.0691081001510742 Q539 -I554 0.0689809952617881 E547 -M564 0.068860998038618 A553 -E563 0.0685125243982041 Q539 -V551 0.0678419248184566 R432 -T550 0.0678056668738378 M436 -I554 0.0673500105219649 L542 -T550 0.0658643471155226 G548 -A553 0.065340422585964 A553 -L558 0.0639769046431642 R544 -V551 0.0613060573010595 M546 -M564 0.0607472239740385 Q539 -R557 0.0606927265259647 A553 -L561 0.0535622990322242 L542 -I554 0.0527082234955447 I538 -A553 0.0520929380827564 T426 -M436 0.0430882928748446 G548 -E563 0.0374080093728488 V437 -I538 0.0363503894794355 M546 -T560 0.0322270009747549 H540 -G548 0.0319898069366289 V425 -G435 0.0310762780731459 I538 -I554 0.0299088546367852 I538 -L558 0.0294961848397532 A536 -V545 0.0288332992719109 L552 -T560 0.0275552362146314 Q539 -L552 0.0254278120019533 E428 -M436 0.0245565593984521 G435 -L542 0.0240851683365619 A536 -M564 0.0238178133421306 V551 -L561 0.0224695202444309 R431 -T550 0.0215912470786721 R432 -V551 0.0213185087536645 H540 -L558 0.0197082275587882 T543 -S559 0.0194232163680894 A541 -G548 0.0170504214471384 E547 -L552 0.016366695974007 E535 -H540 0.0158463327146297 E535 -R544 0.0153227529347664 T438 -Q539 0.0121236813693084 T438 -L552 0.00934613424815556 Q539 -A553 0.00876375013140596 R544 -T560 0.00535291871922272 M546 -E563 0.00300260982673439 T438 -L542 0.00116197069157575 Q439 -A555 -0.00242969620870448 Q427 -V437 -0.00509045649926865 Q439 -E535 -0.00904803415771771 Q539 -A555 -0.00962049606161175 H540 -V545 -0.00978052259713502 T543 -I554 -0.0100292117956888 T543 -M564 -0.0114614876360273 V437 -T550 -0.0128656256661683 A541 -M564 -0.0150053395483764 A555 -T562 -0.0173483918976771 Q439 -I554 -0.0187166924396864 S537 -L558 -0.0189318022123182 E535 -I554 -0.0192243462823898 Q539 -T560 -0.0195794616660016 R557 -E563 -0.0207399368762755 V437 -A555 -0.0231006662913054 E535 -E563 -0.0232502315089009 I538 -A555 -0.0233433534346439 T426 -Q433 -0.0234841327604198 T438 -V551 -0.0246929744796867 V437 -A541 -0.0250409401666785 V551 -M564 -0.0250592238538436 A536 -T543 -0.026304193442364 A536 -H556 -0.0273509264029643 S537 -T562 -0.0327018634824583 T543 -A555 -0.0338399944507874 E535 -A553 -0.036082079703892 A541 -T560 -0.0395540570794931 A541 -V551 -0.0397898869264441 T543 -A553 -0.0401558102187227 I538 -T560 -0.0406352784631299 T550 -M564 -0.041746269813838 V437 -A553 -0.043767333715234 L542 -A555 -0.0443003339932995 Q433 -T550 -0.0446967326889833 T543 -L552 -0.0498579625142135 A553 -T562 -0.0529127791438659 V551 -T560 -0.0533578116234263 Q439 -A553 -0.0536009799071122 R544 -L552 -0.0550915370129748 Q439 -L542 -0.0562970334600297 V545 -A553 -0.0574428366115196 I554 -S559 -0.0575539359501747 V437 -Q539 -0.0584426414819748 E547 -A553 -0.0614913568700852 M436 -A555 -0.0616609824440815 R544 -L561 -0.0665933329618478 L542 -T560 -0.068039204402611 E535 -L561 -0.072307180070206 R544 -A553 -0.0733062437406815 R557 -T562 -0.0746794360916487 I434 -L552 -0.075410140460731 A541 -A553 -0.0781862841393324 V551 -S559 -0.080172315696615 H540 -M546 -0.0806791980696606 T543 -T560 -0.0809350633717187 T543 -T550 -0.08144846975721 V545 -V551 -0.086271784977308 V437 -T543 -0.0876735905389658 L552 -T562 -0.088019168501889 T543 -L558 -0.088982111903074 R544 -S559 -0.0933828470864371 H556 -E563 -0.0939303053863672 I554 -L561 -0.0947760210359533 L552 -E563 -0.094995890490905 R432 -K549 -0.0960180536073594 M436 -L542 -0.0965950554126783 Q427 -Q433 -0.0979469320844091 L542 -E547 -0.097978611547723 E535 -A541 -0.0986603893110578 T426 -R431 -0.101246794345564 Q439 -I538 -0.103185309986527 V545 -L552 -0.103472789467614 S537 -S559 -0.105457509030713 I434 -G548 -0.105597043846991 E535 -L542 -0.112578803284207 T438 -H556 -0.113706095851902 V437 -K549 -0.114060010001914 H540 -M564 -0.116750550756867 E535 -S559 -0.117291437345429 V545 -T562 -0.118952211131313 S559 -M564 -0.119350221590578 G435 -I554 -0.121789041788155 A541 -M546 -0.123102800165405 H540 -S559 -0.123111481208654 M436 -M546 -0.123149821982777 V551 -T562 -0.125608618053271 G435 -L552 -0.129345146444861 I538 -E547 -0.134767181683943 A541 -K549 -0.136309844595973 L542 -M564 -0.138654962656664 H540 -A553 -0.143311259357548 A541 -E563 -0.146743294409986 A536 -T562 -0.146855081135411 S429 -G435 -0.148180229263416 E535 -R557 -0.153204841691314 T438 -A553 -0.157518609203718 V437 -L542 -0.15839866519471 A536 -E563 -0.158634105071226 E535 -L558 -0.159875892132908 R432 -L552 -0.165673425559563 L542 -A553 -0.168787671923563 S537 -L561 -0.171229324954653 M436 -K549 -0.175462421755061 S429 -M436 -0.178865314554748 E428 -V437 -0.179633889395323 I554 -E563 -0.186232694313113 Q539 -M546 -0.188282402180227 L542 -K549 -0.190545820980534 K549 -M564 -0.191215758465058 H540 -V551 -0.191490823973734 L542 -L552 -0.193396350979397 I538 -V545 -0.193798835904343 I538 -E563 -0.197138450880946 G435 -V551 -0.199620339266172 E547 -T562 -0.20124204653599 A553 -T560 -0.203795058027971 V437 -L552 -0.20528769457137 I434 -T550 -0.211716420504343 T438 -E535 -0.212115154230197 T438 -I554 -0.212937773893356 T426 -I434 -0.21437726210925 T543 -V551 -0.214970065608057 E547 -E563 -0.215880355275367 S537 -T543 -0.21633517321166 A553 -S559 -0.217769392351209 I538 -T562 -0.218371489887912 L542 -V551 -0.220934995373274 M436 -A553 -0.223233174185788 Q539 -M564 -0.227239366585692 A555 -M564 -0.231678352773331 A555 -E563 -0.231864624023906 A536 -L558 -0.232829893333436 T543 -G548 -0.237294316586289 V437 -I554 -0.238386992830055 T543 -K549 -0.242952531544263 V425 -Q433 -0.247045176502411 A536 -L542 -0.254258742750475 Q539 -L558 -0.255445161417582 M436 -V551 -0.260319418097773 I434 -K549 -0.264382118016652 M546 -L552 -0.268817884363425 H556 -L561 -0.270346874403107 Q427 -M436 -0.272118471934356 A555 -L561 -0.273877166150296 E428 -G435 -0.277550506195867 V437 -V551 -0.279665264353076 T543 -T562 -0.280687619586828 A541 -E547 -0.288369817025356 L542 -T562 -0.292074308741089 L558 -M564 -0.299462033141102 Q539 -V545 -0.322239422009083 V551 -E563 -0.328229511302673 I538 -S559 -0.32878980296065 Q427 -G435 -0.3383077066133 S537 -L542 -0.352555963366775 Q539 -L561 -0.363985699049065 A536 -A541 -0.370273175875806 M436 -L552 -0.382734845061787 L552 -M564 -0.38421008195905 I434 -V551 -0.386799595828986 Q539 -E563 -0.392396875378372 I554 -M564 -0.409441617031093 E428 -Q433 -0.409500817806543 H540 -E563 -0.462289222614597 Q427 -R432 -0.830760455882405