[Fri Aug 26 17:14:25 2016] >Input file: TMB7Z3H8M1D.pdb >TM segments: 230-245_ 294-309 MAIDEN score = -7.6350 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V236 -D241 0.538006784494046 R304 -V309 0.510056643043827 R303 -L308 0.485574923031949 K230 -R237 0.325082450506695 R237 -M245 0.227804869848374 I232 -I239 0.137196962975672 R237 -H244 0.13499332765417 A233 -D241 0.12245532645179 V236 -L243 0.110326569365374 A297 -I302 0.108511998912627 V236 -H244 0.103770385373346 K230 -L238 0.10014572162497 I232 -R237 0.0949315108423061 T296 -R304 0.0942379909814919 E234 -M245 0.0892230509713804 E301 -S306 0.078655132729144 S295 -R303 0.0761354548956721 A235 -L243 0.0746668869010318 Q231 -I239 0.0710872067299415 E301 -V309 0.064732729647325 E234 -H244 0.058334714714928 E300 -L305 0.044168211514271 E234 -M240 0.0398827448838137 S295 -E300 0.0388861143056403 A235 -M245 0.0368661451641934 A299 -V307 0.0294112935460511 A299 -R304 0.0280769300290729 R237 -S242 0.0258451549866923 A297 -L305 0.0252289979851494 K230 -I239 0.0135796570721642 E300 -S306 -0.00266692746839126 S295 -E301 -0.0119247641467801 M298 -V307 -0.0161048323133155 E301 -L308 -0.0299823246935222 I232 -M240 -0.036001287172203 Q231 -V236 -0.0380740680592002 M298 -R303 -0.0399752998680367 A299 -S306 -0.0414233617532505 I232 -D241 -0.053332256978345 Q231 -R237 -0.0540408028801793 A233 -L238 -0.0631024524691277 S295 -R304 -0.0665504646570245 K230 -M240 -0.0691927920760662 E234 -S242 -0.0698407868344872 A299 -L308 -0.072696454832653 V236 -M245 -0.0762803785490558 L238 -H244 -0.0853009081753449 M298 -S306 -0.0854315754932973 E300 -L308 -0.0855268650226053 Q231 -D241 -0.0888008642439139 A233 -S242 -0.090816396946563 T296 -L305 -0.106490142987772 T296 -E301 -0.107878313204334 K230 -A235 -0.111975358174106 S295 -I302 -0.116979395506702 I232 -L238 -0.117031325469925 E234 -D241 -0.121492913694718 A297 -S306 -0.124173565689531 A235 -D241 -0.133133083643683 T296 -R303 -0.133458426078735 E300 -V307 -0.137305633769289 Q231 -M240 -0.140279364438779 E234 -L243 -0.148686369038606 A235 -H244 -0.158127849960122 R303 -V309 -0.165154228375504 A235 -S242 -0.168036074939475 V294 -I302 -0.181500422289189 I302 -V309 -0.183836424659406 E300 -V309 -0.18576459639389 E234 -I239 -0.190036673995459 V294 -E301 -0.203643284197553 K230 -V236 -0.205530369749672 A297 -R303 -0.205763102008854 M298 -R304 -0.209343861140009 A297 -R304 -0.210393538713107 A299 -L305 -0.219652899780884 A233 -M240 -0.220377551919429 M298 -L305 -0.225917013664989 V294 -E300 -0.248432531909796 V294 -R303 -0.261040393093525 I239 -H244 -0.274830219082048 R237 -L243 -0.276546178064227 L238 -L243 -0.289273972815831 M240 -M245 -0.318902127379733 Q231 -L238 -0.331272687259798 E301 -V307 -0.336609327703246 A235 -M240 -0.338331270403103 A233 -I239 -0.343938174128327 I239 -M245 -0.362670326010043 V236 -S242 -0.365743647462608 T296 -I302 -0.404234320906193 I302 -V307 -0.406023606376332 I302 -L308 -0.418015257933635 V294 -A299 -0.465430041411765 L238 -M245 -0.472506903054904