[Fri Aug 26 17:29:23 2016] >Input file: TMB9I2X3M3D.pdb >TM segments: 908-947 MAIDEN score = -0.7225 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- D923 -V929 0.859548719704746 R920 -V929 0.755275879124408 V922 -V929 0.752793325001772 D923 -H928 0.553444334464579 Y939 -S947 0.326203087691417 G938 -Y944 0.253727376804999 T936 -Q946 0.244768119529742 T931 -P942 0.221195378635626 P942 -S947 0.219280504541107 V929 -G945 0.211856410768521 G917 -G938 0.2037401923087 R920 -H928 0.201161398186518 G935 -G945 0.18376350079809 Y939 -Q946 0.174884462757731 F921 -V929 0.171419376227901 G935 -S947 0.163974031153037 G917 -A934 0.161636831452177 A919 -T936 0.151186969889357 S930 -G935 0.147403300392172 S930 -E943 0.143334292319204 V922 -H928 0.134727555101373 Y939 -Y944 0.133875645431597 V929 -A934 0.132288978686247 T932 -I937 0.126681553458708 V929 -S947 0.125019329336468 G917 -I937 0.121116838081006 V933 -Y939 0.115511052862829 V922 -S927 0.113505358457177 G917 -G935 0.112371383230799 R920 -Q946 0.112357556825567 G938 -E943 0.110782783899731 V922 -T931 0.110733033485193 I937 -Y944 0.109413097749588 A919 -G938 0.106571215600008 A919 -G935 0.106098986216076 R920 -S927 0.104167096633236 V913 -L918 0.103286506351471 H928 -E943 0.100125729190833 L918 -V929 0.0994298785546985 A934 -G945 0.098637392911881 G917 -T936 0.0962667059988778 F916 -A941 0.0924906511842982 T931 -G945 0.0892504140264184 L918 -A941 0.0879864399176062 V929 -G935 0.0871873051382215 G935 -Q946 0.0867996480145385 L918 -V933 0.0821473083552062 V922 -T932 0.0806349243617177 T914 -G938 0.0795669315893122 H928 -S947 0.075270066936015 A919 -T931 0.0728179300937937 F916 -G938 0.0715544539567556 G938 -G945 0.0713667020226625 V940 -G945 0.0662295852064725 G935 -V940 0.0652710902191354 R920 -A934 0.0640526527720346 F921 -H928 0.0623922448744092 R920 -D926 0.0583947561784721 R920 -T932 0.0559610976595921 F916 -I937 0.0531925285492076 I937 -G945 0.0498849000665702 V933 -Q946 0.0431852180852288 S927 -G945 0.042386885242177 A919 -S930 0.0418834189283781 D915 -R920 0.0375687020331807 G925 -S930 0.035258912007638 D915 -T936 0.0339012327269157 L918 -T932 0.0331642873811551 L918 -S930 0.0292375459249332 A919 -T932 0.0195029933433566 L918 -V940 0.0144078552495897 F921 -T931 0.0135573818721533 S927 -Q946 0.0132048506994291 I937 -P942 0.0107054712467622 A919 -I937 0.00888302361607263 V913 -A919 0.00788408499505777 V929 -P942 0.00465215763575433 T936 -S947 0.00342081498692792 A919 -H928 0.0018123929138063 S930 -S947 0.00143441181546589 A934 -Y944 0.00109112640646636 L918 -S947 -0.000811517193360527 V933 -P942 -0.00210071357556796 A919 -P942 -0.00304459260418355 T931 -Y939 -0.0043548680994121 V933 -G945 -0.00458114284063349 G917 -V922 -0.00599796564052379 T914 -R920 -0.00686575467843253 A919 -A941 -0.00831452312813674 F916 -G935 -0.0096730635157507 H928 -Y944 -0.0103065304959413 L918 -Y939 -0.0123299032134723 T931 -G938 -0.0131716082625615 Y939 -G945 -0.0142667715618898 V924 -S930 -0.0161403973375456 D923 -S930 -0.0163863388553267 A919 -Q946 -0.017178813682345 T932 -S947 -0.0178001808205561 T931 -Y944 -0.0183415557591937 D926 -T931 -0.019100731830469 A919 -A934 -0.0194667869507548 G938 -Q946 -0.0210197658511946 D915 -F921 -0.0270910765909189 L918 -Q946 -0.0290738785182656 H928 -G945 -0.0316070577863004 F916 -V922 -0.0322314618386885 S930 -T936 -0.0324842932039893 A934 -V940 -0.0345492422805447 A934 -P942 -0.041818067140484 G935 -A941 -0.0435759597471534 V929 -Y944 -0.0442173877294092 T931 -Q946 -0.0452658649272253 R920 -G935 -0.0476764745419089 F916 -T936 -0.0487237668581368 D915 -I937 -0.0501333793804832 G917 -T931 -0.0531448005274807 T932 -G945 -0.0541722130260673 V929 -I937 -0.0549378038798434 G935 -P942 -0.0589929491735817 G938 -S947 -0.0635218547823015 A919 -Y939 -0.0647456370093722 I937 -Q946 -0.069268132471306 G917 -V929 -0.0701164188452834 A934 -A941 -0.0724489806602329 R920 -S930 -0.0758431019975196 F921 -S927 -0.0771023696076869 A934 -E943 -0.0813739032403462 V933 -G938 -0.0822361312373809 A934 -Y939 -0.085948926993577 V940 -Q946 -0.0877000564075718 L918 -A934 -0.0884394343190733 L918 -P942 -0.0899638099457585 V929 -E943 -0.0932529156952047 T914 -A919 -0.098316274347424 H928 -Q946 -0.0989203361336628 D923 -T931 -0.0997712765170418 T936 -A941 -0.100460344524299 R920 -T931 -0.110946506103416 S930 -I937 -0.111502929812739 L918 -G938 -0.115206059846645 D915 -G938 -0.115684766883815 A934 -Q946 -0.11749866313044 T932 -Q946 -0.125768888440921 T931 -I937 -0.125849986089275 A919 -S927 -0.12614071611502 A919 -D926 -0.127852742517387 D908 -V913 -0.140937072775893 T931 -T936 -0.14113066423964 S930 -Y944 -0.144818104635277 S930 -G945 -0.146131459126849 F916 -V929 -0.14711236579772 I937 -S947 -0.148424632746622 R920 -V933 -0.149718657602102 F916 -F921 -0.151806798733894 S930 -Q946 -0.154307730498936 T936 -P942 -0.166651588791665 R920 -I937 -0.167918441748105 D915 -A941 -0.167940331916039 S930 -P942 -0.168771753867181 R920 -G925 -0.171134959837947 I937 -E943 -0.182621596942782 V922 -S930 -0.188282723167511 F921 -S930 -0.189172532162792 V913 -R920 -0.189486337143502 A941 -S947 -0.192592971556461 L918 -T936 -0.194683466058805 L918 -H928 -0.196242988901691 A941 -Q946 -0.19768637998772 F921 -D926 -0.204954643007541 T931 -E943 -0.212862314388724 T931 -S947 -0.213789159329851 L918 -G935 -0.224034538471787 L918 -T931 -0.225907199702482 V924 -V929 -0.269377080473231 H928 -P942 -0.309113782878216 A919 -V929 -0.317257718148229 V933 -S947 -0.321830550905106 V940 -S947 -0.351912957040454 L918 -I937 -0.356655058456765 A934 -S947 -0.392514433580617 V929 -Q946 -0.401070589601251