[Mon Aug 29 17:30:42 2016] >Input file: TMB9NU39M3G.pdb >TM segments: 374-384_ 389-407_ 503-543 MAIDEN score = -13.6715 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- Q509 -I541 1.11591591011256 L377 -L403 1.03341795631126 I384 -I390 0.913175643566124 D378 -L403 0.894105386426649 L377 -K400 0.459011434036622 T530 -E536 0.43000844086246 R508 -L513 0.417597382515292 L377 -T402 0.416143209542873 G394 -K400 0.407702171947651 V380 -L403 0.390432518153602 I384 -K389 0.389922541688709 I393 -K400 0.384316123364599 L533 -E538 0.381216513620503 V516 -L524 0.373647795047695 G391 -E543 0.34415098224333 E528 -Q542 0.337830631001735 Q509 -E543 0.329131336583547 L377 -A398 0.321744544763674 E536 -Q542 0.304882934442618 Q509 -E528 0.303947456017342 S531 -A539 0.302713399253248 G391 -S401 0.299666035858422 G391 -L524 0.276270785768221 R508 -A532 0.263578839291413 D534 -A539 0.26001315786576 H379 -K400 0.259111096225115 K389 -Q542 0.259056288449417 R510 -A529 0.25364896206798 S535 -Q542 0.252295119525933 G391 -D527 0.250156417918856 G375 -S401 0.248136310844681 G376 -L403 0.246253237291081 T512 -Q542 0.240995062415416 G376 -A398 0.237643269192673 G391 -Q542 0.236135498991358 L377 -V404 0.235980955300978 L513 -T530 0.235567241906016 G376 -G394 0.224700448922516 Q507 -E538 0.221407129843017 V511 -I541 0.220828433493802 T530 -E543 0.220712516999475 R510 -I541 0.20309315500554 R508 -A529 0.203051934631935 G394 -E528 0.192697012581548 V516 -L526 0.192599440421314 G391 -G399 0.185678649457786 K519 -L525 0.183371933473421 N381 -S401 0.177542759969475 S401 -S531 0.176772928026918 R515 -D527 0.176763477250774 T530 -I541 0.176720596695671 H379 -T402 0.176593271115642 R510 -D534 0.175902806787934 R510 -V537 0.173096833110305 A529 -E543 0.170304258373394 K389 -D527 0.169151147589681 G376 -K400 0.168596917582887 T374 -K400 0.166182476380032 G375 -V404 0.16582613338135 R508 -S540 0.160885924545335 G375 -G394 0.159577067458772 T374 -K405 0.154633826915377 Q507 -T530 0.154179994894836 T512 -A532 0.152557553616899 T512 -D527 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