[Mon Aug 29 17:46:20 2016] >Input file: TMC2GJH8M1G.pdb >TM segments: 431-440_ 445-458 MAIDEN score = -3.3323 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- T440 -V451 0.407452233570202 T440 -T447 0.370734829976367 D438 -V452 0.335990541250344 D437 -V452 0.269172663837086 D438 -D450 0.248314030805897 D437 -V455 0.242866025500574 S445 -A453 0.214107229609323 V446 -V451 0.206415075082688 P439 -D450 0.177532820955293 I435 -T440 0.150573652374638 V446 -V455 0.14111043135769 T440 -A456 0.134034363726711 L434 -V455 0.126160102941252 D438 -V455 0.103625599357112 V446 -A454 0.0982104681461422 Q448 -A456 0.0952008717690034 L434 -L458 0.0933451191449846 V446 -A453 0.0879870471769242 D450 -V455 0.0874291575830615 L436 -A453 0.0832927268713224 P439 -S445 0.0805980499950234 P439 -T447 0.0786678279598192 L434 -A454 0.0759431637123411 A449 -A457 0.0711812012856337 P439 -V452 0.0687976042310654 A449 -A456 0.0641729981341506 T440 -V446 0.0584268232466805 P439 -A453 0.0522998604927754 L436 -Q448 0.0512694237121245 P439 -A456 0.050579330590371 V433 -A456 0.0490698635014075 L436 -V451 0.0485677231650907 D450 -L458 0.0474432378643184 I435 -A456 0.0398679734449088 V433 -V455 0.0365716881133764 L434 -P439 0.0283916358302356 D438 -S445 0.023332396909129 D438 -T447 0.023177392975392 P439 -V451 0.0149882562006329 D438 -A449 0.00449461935957807 D438 -V451 0.00383765223204957 P439 -A454 -0.00132320008033915 L434 -V452 -0.00313351282334384 P439 -A449 -0.00400796788430213 A449 -L458 -0.00867215211215466 T440 -A454 -0.00916670548396059 L436 -A456 -0.0198808556960799 Q448 -A457 -0.0199157127497416 T440 -Q448 -0.0274574378652601 D437 -V451 -0.0346901252302967 T447 -A456 -0.0380994180029659 I435 -L458 -0.0387765049785358 Q448 -A453 -0.0432388838772835 D450 -A457 -0.0442395355711573 P439 -V446 -0.0562318210687813 T440 -V452 -0.0612142142018328 L436 -A454 -0.0613584789818384 V451 -A456 -0.0623869111399955 T447 -V452 -0.0628759119343512 D438 -Q448 -0.0665004909215263 T447 -V455 -0.0683372978914285 P439 -L458 -0.0742271731647257 S445 -D450 -0.0749925761035852 V433 -L458 -0.0798563695726715 P431 -L436 -0.0835741854143341 V451 -A457 -0.0839184554406529 L436 -L458 -0.0862372638024151 L434 -A456 -0.0870220114227704 D437 -Q448 -0.0879541900665365 T440 -A453 -0.0903973390399448 T447 -A454 -0.10594341316659 Q448 -A454 -0.108879102317258 P431 -L458 -0.109485962344278 I435 -V452 -0.112773580797845 L436 -V452 -0.1130847690934 T440 -A449 -0.120067062903766 S445 -A454 -0.125775354851092 D438 -A454 -0.128390038954658 L434 -A457 -0.134912976416265 D438 -A453 -0.140276006247698 D438 -A456 -0.157451562124798 P439 -Q448 -0.157775181616275 E432 -L458 -0.162076083518436 D450 -A456 -0.173748599233994 I435 -V455 -0.18006641117206 T440 -D450 -0.18538464987061 T447 -A453 -0.195587408783608 P439 -V455 -0.209339207482243 V452 -L458 -0.210233125549612 V452 -A457 -0.253164298113038 Q448 -V455 -0.262022825809491 T440 -V455 -0.266142890218439 T440 -S445 -0.268494150687699 L436 -V455 -0.289964384642609 V451 -L458 -0.291862115643961 A453 -L458 -0.302853277170714 A449 -A454 -0.325130350674663 S445 -V452 -0.332200560358817 V446 -V452 -0.353031537083635 S445 -V451 -0.360780171022743 A449 -V455 -0.36090763925535