[Mon Aug 29 17:47:07 2016] >Input file: TMC2M6B4M1G.pdb >TM segments: 568-574_ 605-624 MAIDEN score = -7.5129 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V574 -W605 0.703757309063649 L572 -W605 0.675351856940671 V574 -A606 0.563129527997543 Y573 -W605 0.537969230114121 F608 -F613 0.492082193250691 Q609 -P619 0.341077164001879 S615 -Y620 0.324201761783628 E610 -S615 0.297692913328902 V574 -Y621 0.291847852486661 E610 -Q618 0.253218490749951 W605 -E610 0.246301427325548 S571 -Q609 0.235676494776396 A606 -Y620 0.234121716858487 T607 -Q618 0.222555899734291 L572 -T607 0.208238462213955 S571 -S617 0.203587712496712 N612 -Y620 0.180407295905648 V574 -E610 0.167323886082687 E610 -Y621 0.165445498924323 S614 -V622 0.156339501126026 Y573 -S617 0.147828811677448 F613 -Q618 0.14264205951745 Q609 -A616 0.139309827613708 A606 -A616 0.138236467219739 T607 -S617 0.138135421170611 V611 -S617 0.132108841595768 Y573 -A616 0.128852161119137 S617 -V622 0.126707508650583 Q609 -Y620 0.118860908503111 I570 -Q609 0.117342758489164 L572 -V622 0.115373354184236 W605 -S617 0.112215702143323 I570 -W605 0.104010432211502 V574 -V622 0.102803780340966 W605 -S614 0.10279815626879 S614 -Y621 0.0989771537717923 V611 -Y620 0.0968938203591652 L572 -L623 0.0945997229353701 N612 -Y621 0.0940511541245375 Q609 -S614 0.0936922751996239 N612 -L623 0.0911095758939275 S571 -A606 0.0896876352217664 T607 -Y620 0.0875482285805659 F608 -L624 0.0772200847067319 V574 -S615 0.0720266408009604 L572 -E610 0.0714139174319412 F608 -Y621 0.0712812300003947 N612 -V622 0.0560405730609141 E610 -Y620 0.0550546423384672 A606 -Y621 0.0546040372177066 A616 -Y621 0.052910005690157 L569 -L623 0.0498082291976631 N612 -L624 0.0438025128221273 N612 -S617 0.043434297224008 L572 -A616 0.0427932884158624 V574 -Q618 0.0422354123699522 F608 -Q618 0.0372990605063138 L572 -S617 0.0274313085602106 S571 -L623 0.0272529919079692 L572 -V611 0.0267316986379216 I570 -P619 0.0233625740080858 E610 -V622 0.0211231575331502 A616 -V622 0.0210318291117861 S571 -F608 0.016639107689703 L569 -Y620 0.0150815813480838 L572 -F613 0.0114734221523536 V574 -Y620 0.00681664793057379 V568 -Y621 0.00504228861012024 W605 -Q618 0.00442564543585999 F608 -V622 0.00123804577036357 F608 -P619 -0.00473125897289725 S614 -L623 -0.00848144850706878 A606 -P619 -0.00896840379623054 Y573 -V622 -0.0143949497632203 V611 -Q618 -0.0144598966187415 V611 -V622 -0.0202563245967098 W605 -S615 -0.0231025654681609 Y573 -Y620 -0.0243570404167892 E610 -P619 -0.0253081125723966 W605 -V622 -0.0279807785984909 W605 -N612 -0.0377246500971763 W605 -F613 -0.038050708703727 F608 -S615 -0.0382609525197082 V574 -Q609 -0.0395100206727983 V574 -S614 -0.0404113996741313 T607 -P619 -0.040867394989327 V574 -V611 -0.0408830624864789 Q609 -L624 -0.0418404124543934 W605 -P619 -0.0436176117618148 F608 -S617 -0.0440042237228655 S571 -Y621 -0.0459280119349419 A606 -V622 -0.0473041682276647 Y573 -T607 -0.0484762224600335 A606 -N612 -0.0511296593058401 L569 -P619 -0.0532608617902173 L572 -Q609 -0.0548732347890049 A606 -V611 -0.0577000648466726 Q609 -L623 -0.0648175044161675 W605 -Y621 -0.0685834306394015 Q618 -L623 -0.070026637542139 T607 -N612 -0.0722273796382342 Y573 -F608 -0.0753165539078271 V611 -Y621 -0.078666335287465 V568 -V622 -0.0799392352834567 V574 -T607 -0.0799744749788713 Y573 -A606 -0.0827388032831511 V574 -F613 -0.0827621854815943 Y573 -S615 -0.084624893977757 Y573 -E610 -0.0853137251683167 F613 -L623 -0.0913355337065859 I570 -A606 -0.100483308254315 L572 -S615 -0.101246110428725 S571 -L624 -0.10134517787032 A606 -F613 -0.106746854587619 N612 -Q618 -0.107360433103015 V574 -N612 -0.1083293127635 V574 -S617 -0.112403099647715 W605 -Y620 -0.113686822217408 I570 -L624 -0.119770445852362 W605 -V611 -0.120135885503328 L572 -Y621 -0.120213161823832 F613 -V622 -0.120645838981128 I570 -Q618 -0.122799901013699 F608 -Y620 -0.123437553140544 I570 -F608 -0.132038819285577 F613 -L624 -0.134374676072063 Q609 -S617 -0.135815116414467 F613 -Y620 -0.142405422244926 E610 -S617 -0.142785457490102 V611 -A616 -0.144614794293455 V568 -L623 -0.15090797996152 S614 -P619 -0.15682384828402 L572 -L624 -0.160167255507708 Y573 -Q618 -0.16053220076039 F613 -Y621 -0.166574301140688 I570 -Y620 -0.167295515037925 S571 -P619 -0.167619699801831 S571 -Q618 -0.169245736979875 L569 -Y621 -0.169833695304528 F613 -P619 -0.170751711459445 L572 -F608 -0.171639482679507 S615 -Y621 -0.171984257267014 Y573 -P619 -0.179969842797424 S615 -L623 -0.185845416326073 L569 -L624 -0.187995084613648 L572 -N612 -0.19172060641887 I570 -Y621 -0.191976042117946 Y573 -Y621 -0.196110878697809 Y573 -Q609 -0.196882554204544 V574 -P619 -0.202388606871591 A606 -S614 -0.203534566308923 A606 -Q618 -0.204266079771287 W605 -A616 -0.212838794181787 S614 -Y620 -0.224477085189434 L569 -V622 -0.232953064097146 T607 -S614 -0.233001553667982 T607 -S615 -0.235205988407412 E610 -A616 -0.237306403708923 S571 -V622 -0.243818370514347 L572 -Y620 -0.244084456540286 S571 -Y620 -0.249681211324331 F608 -S614 -0.251360827039163 S571 -W605 -0.253506694894244 T607 -F613 -0.269239760964647 F608 -A616 -0.270878966441076 L572 -A606 -0.298440864358713 A606 -S615 -0.312978718641679 V574 -A616 -0.320222015771485 S615 -V622 -0.33328032560052 T607 -A616 -0.334322161635526 I570 -L623 -0.341999781136121 Q609 -Q618 -0.345559992030487 V574 -F608 -0.364132368743322 Q609 -S615 -0.364979811492391 Q609 -Y621 -0.387098914819456 I570 -V622 -0.395892457485484 V568 -L624 -0.402429798898146 L572 -Q618 -0.432875298191718 Q609 -V622 -0.451855683575067 A606 -S617 -0.504249317432159 L572 -P619 -0.569016901716642