[Mon Aug 29 18:13:15 2016] >Input file: TMC6RBQ7M1G.pdb >TM segments: 358-368_ 441-457 MAIDEN score = -4.0137 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- Q449 -H454 0.335014538192605 E444 -R450 0.287705041873994 I447 -A452 0.247849341864147 Q449 -S456 0.146178468328348 V442 -V451 0.143834582611747 I447 -H454 0.139806068575567 Q445 -R450 0.138207514176593 E444 -H453 0.13802179143709 V446 -H453 0.133391768694117 A448 -R455 0.13138303980583 L366 -I447 0.116607425910967 L366 -A452 0.115733412780288 Q445 -H453 0.111132440371615 A448 -S456 0.109593922384986 T364 -V451 0.106493160351407 R450 -R455 0.104467169754657 E368 -I447 0.0955258172236237 R450 -S456 0.0745802891354078 E368 -E444 0.0701666424288144 L358 -D363 0.0659624565356474 V442 -Q449 0.0617490496140698 E444 -A452 0.060853215453549 P361 -L366 0.0577447812326817 R450 -I457 0.0558464636671181 V442 -R450 0.0498490093262702 V446 -H454 0.0481086273773714 F367 -V451 0.0414965951143708 L365 -H454 0.0309357719587995 Q449 -R455 0.0289551686552891 P361 -F367 0.0199344994939423 T364 -I457 0.0191752389784319 T443 -A452 0.0188245603250519 S441 -Q449 -0.000342405462843143 V442 -I447 -0.0202069238945803 S441 -V446 -0.0233378621581548 L366 -A448 -0.0238016451279632 F367 -I447 -0.031887893504654 T443 -Q449 -0.048658971560626 L366 -R450 -0.0492035642011835 T443 -V451 -0.0541132052382869 A360 -L365 -0.0645927566254398 V359 -T364 -0.0796198958222579 S441 -R450 -0.0800818321373769 V446 -A452 -0.0820278675922768 E368 -A448 -0.0837866475791991 A448 -H454 -0.0886013450975023 L365 -V451 -0.104515911181372 V359 -L365 -0.104726266406135 T364 -H454 -0.118777857920784 Q449 -I457 -0.140446566791597 T443 -R450 -0.147160550935154 E368 -V451 -0.150191748595441 S441 -A448 -0.167923725670506 I447 -R455 -0.171359383845748 Q445 -A452 -0.172472298283522 F367 -A448 -0.179053839194076 F367 -E444 -0.180769123601663 V451 -I457 -0.18613677258109 L366 -V451 -0.196597776588739 E444 -Q449 -0.213458531381992 H362 -F367 -0.2142274445873 A452 -I457 -0.226924361364799 L366 -H454 -0.232888026506702 T443 -A448 -0.243652958895144 V451 -S456 -0.252851306198747 E444 -V451 -0.259554218303282 V442 -A448 -0.271629158696364 V446 -V451 -0.303314114467444 S441 -I447 -0.352750071049757 Q445 -V451 -0.4621095324879 I447 -H453 -0.485984038367605 A448 -H453 -0.512948168393746 Q445 -H454 -0.536122366229929