[Mon Aug 29 16:39:55 2016] >Input file: TMC6SAU9M1G.pdb >TM segments: 265-275_ 334-342 MAIDEN score = 4.2128 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- K274 -Y336 5.22629016844445 P268 -Y336 0.283426146781999 E267 -R272 0.26976047550614 A271 -Y336 0.23907205112055 R265 -A271 0.216053348491467 G270 -T275 0.183110941031584 A271 -E339 0.176963907091857 P268 -K274 0.173598006297445 G270 -T338 0.169094791666288 R265 -R272 0.148583875292912 G270 -T337 0.148307022192955 R272 -T338 0.133879593313913 K273 -E339 0.126667828573366 R272 -T337 0.12404734642326 A271 -S340 0.120833800083845 G266 -K273 0.119413492254928 R272 -R335 0.109922319046762 R272 -Y336 0.107416637201136 G266 -T338 0.0877868003219239 Y336 -A341 0.0838348819005581 K274 -S340 0.0696914737594221 P268 -K273 0.0635783851123186 R335 -A341 0.0572694126310433 R269 -T338 0.0472102578880875 G266 -A271 0.0439731531438134 K274 -T338 0.0424020503749327 K273 -S340 0.0351981235212784 T337 -L342 0.0344787640070301 R269 -T337 0.030491023652756 G266 -E339 0.0270978986574297 K274 -R335 0.0256483342237259 P268 -E339 0.0231703342850711 T275 -E339 0.0211993392117593 K273 -T338 0.0179307856807231 G266 -R272 0.0132391184138917 E267 -T338 0.00360782572765306 R265 -G270 0.00174484891397952 R269 -T275 -0.00150360865636401 R272 -E339 -0.00807242661897833 K274 -T337 -0.0100093524576358 G266 -S340 -0.0116757022812521 R269 -K274 -0.0141199062542494 R272 -I334 -0.0246093207694773 P268 -S340 -0.027807776595024 E267 -K274 -0.0306031104421982 K273 -T337 -0.04098665996095 G270 -Y336 -0.042003506171076 R265 -T338 -0.0477850616296297 G266 -T337 -0.0482423096409131 K274 -E339 -0.0487471073936971 P268 -T338 -0.0534247730457635 R265 -S340 -0.0569513694815127 R272 -S340 -0.0918646109338279 P268 -T275 -0.105981511566815 A271 -T338 -0.106004679093628 A271 -R335 -0.107690675038433 R335 -S340 -0.108230775129247 I334 -E339 -0.109106553898835 T275 -I334 -0.117737971378643 K273 -R335 -0.135971064772019 K273 -A341 -0.138840165250615 T275 -T337 -0.142485802547205 Y336 -L342 -0.165399436976481 K274 -I334 -0.175147761317276 T275 -Y336 -0.181855155165207 E267 -T337 -0.200010180318923 E267 -K273 -0.208454627122202 K273 -Y336 -0.212436037485498 A271 -T337 -0.219101487453933 R265 -K273 -0.223859942486497 P268 -T337 -0.230524287935542 K273 -I334 -0.272102939161212 T275 -T338 -0.316181210586509 T275 -R335 -0.557682540287055