[Fri Aug 26 16:38:45 2016]
>Input file: TMC9A401M1D.pdb
>TM segments:  399-418_ 513-537

MAIDEN score = -12.8135

Below is the ranking list of the residue pairs and their related pseudo-energy
(the lower, the better). This includes inter-chain residue pairs.

The maximum (least favorable) pairwise energy value has been set to 10.
See the MAIDEN software article:
Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161.


-----------		----------------
Calpha pair		Empirical energy
-----------		----------------
A400 -F406 		0.665865116204817
P399 -F406 		0.5112885079594
R523 -I533 		0.443871014931286
I527 -I533 		0.346762608214766
A521 -K532 		0.298453495253336
L519 -A530 		0.281018647514324
K412 -A417 		0.240361730100491
R523 -K532 		0.226819661460877
I527 -K532 		0.226394162063197
I527 -V535 		0.225003478996807
E401 -G407 		0.218807453540286
V409 -L519 		0.186081917809936
T515 -A530 		0.185977794054218
T516 -H529 		0.157256420253688
T515 -D531 		0.152322238098646
A400 -Y405 		0.148612212630957
S526 -L534 		0.145036576266884
I408 -I520 		0.145015640059519
I408 -T515 		0.12842081520484
Q411 -Q522 		0.125817634585838
I408 -L415 		0.12483577687677
I518 -G525 		0.124587302566457
G525 -L534 		0.123287991138228
I520 -K532 		0.122401933095059
I520 -E537 		0.119317071720445
I518 -L536 		0.118023947017734
Q404 -T516 		0.10926280998646
G525 -V535 		0.109172693336164
T516 -I533 		0.102823826113857
L410 -L415 		0.102302960867282
I524 -L534 		0.101911050571786
G407 -T515 		0.101353722149855
T516 -A530 		0.101308149112359
T517 -S526 		0.0986486929149986
I520 -Q528 		0.0951428706549149
Q404 -T517 		0.0939602307541296
G407 -T516 		0.0920866764448685
L410 -Q522 		0.0902813895719425
D514 -K532 		0.0899118587287262
G525 -K532 		0.0844626381932078
Y405 -I518 		0.0757451649304164
I518 -V535 		0.0734906575475831
L519 -L536 		0.0714964173669679
A521 -S526 		0.0701521873825151
I524 -V535 		0.0692282031385352
S526 -I533 		0.0674731485828712
S526 -L536 		0.0627404036730193
R523 -L536 		0.0624863906282109
H403 -I408 		0.0618644531415085
E401 -F406 		0.061158261199961
I527 -L536 		0.0610886441604155
A530 -V535 		0.0595172569855462
I408 -T516 		0.0592058372111461
G407 -L519 		0.0537898104278113
Q522 -E537 		0.0443888200665725
T515 -K532 		0.0401298881736608
I408 -V414 		0.0385462464703137
H529 -L534 		0.0342813167347313
I520 -S526 		0.0324725581125112
T517 -K532 		0.030763724320015
L410 -T517 		0.028831719887366
R523 -Q528 		0.0264562364284426
L519 -I533 		0.0217961472207571
Q411 -F416 		0.0215336388200864
V409 -A521 		0.0194548287949967
I518 -R523 		0.0193096325379893
A400 -V409 		0.01864788508278
F406 -L519 		0.0176016172413451
K412 -I520 		0.0150415947324141
Q404 -T515 		0.0148222804206237
I518 -I527 		0.0117583326511044
G407 -K412 		0.010823736348069
T517 -I527 		0.00867403113136378
Q528 -V535 		0.00689758764050452
T516 -L534 		0.00443437465798391
G525 -D531 		0.00295320310542857
T516 -D531 		0.00120448593557665
Q522 -D531 		0.000231326723938441
Q411 -I518 		-0.00301325787291518
T517 -G525 		-0.00406896543039115
G407 -D514 		-0.00703029632394614
Q411 -I520 		-0.00784034885338958
R523 -D531 		-0.0079391447813828
L519 -S526 		-0.00907042962370497
Q411 -L519 		-0.0116827809464359
I518 -S526 		-0.0121637342524838
Q404 -V409 		-0.0139252366696268
A513 -I518 		-0.0147063043262053
A513 -A530 		-0.0201201765406109
Q528 -L534 		-0.0233942064411412
V409 -T516 		-0.0257423616494648
I524 -I533 		-0.0261536421496986
Q411 -G525 		-0.0269546118244159
Y405 -T516 		-0.0309714601158073
L402 -G407 		-0.0347635503889748
T517 -Q528 		-0.0356192669682229
A521 -L536 		-0.0365179978912735
P399 -V409 		-0.0368317348002853
F406 -A513 		-0.0371775389584652
I518 -D531 		-0.0395648689535566
Y405 -T515 		-0.0400791232459183
Q522 -Q528 		-0.042680886555738
Q522 -A530 		-0.0440584348978463
L519 -I524 		-0.0451554517089523
A521 -Q528 		-0.0455230848109598
V409 -V414 		-0.0459741781878638
Q411 -A521 		-0.0465370355020212
A521 -E537 		-0.0470056214394878
L519 -I527 		-0.0489671329744921
F406 -I518 		-0.0532912994939645
T516 -K532 		-0.0538378665567794
I408 -D413 		-0.055954851001661
T517 -L534 		-0.0574455585176565
G407 -A513 		-0.0604949220828219
P399 -Y405 		-0.0608223051357184
L410 -A521 		-0.0644741123772725
D514 -A530 		-0.0700364058356657
T515 -H529 		-0.0719192536354258
A400 -I408 		-0.0744448399479527
I518 -Q528 		-0.0764216011792822
F406 -D514 		-0.0766751701920958
Y405 -A513 		-0.0791800655731423
Q522 -I527 		-0.0857547260233158
I520 -D531 		-0.0957196806422667
D514 -L519 		-0.0976048223078148
I524 -D531 		-0.0978785840470651
T517 -H529 		-0.098949437655997
I527 -L534 		-0.0991908136622266
Q404 -I518 		-0.100540510175804
K412 -A521 		-0.100829267992132
A513 -H529 		-0.101071274662432
R523 -L534 		-0.103953657749788
F406 -T515 		-0.106947354106273
T517 -A530 		-0.106994026410713
S526 -D531 		-0.108350400008296
V409 -T517 		-0.111721526484988
I524 -K532 		-0.112192564145022
H403 -T515 		-0.113369820042212
L519 -Q528 		-0.116227301112891
G407 -I520 		-0.12239459749568
H403 -T516 		-0.122694600393278
Y405 -T517 		-0.126702461240042
L410 -I520 		-0.133209949956134
Q522 -I533 		-0.134030530222391
L410 -I518 		-0.135629248889969
A521 -D531 		-0.137310571763811
I408 -A521 		-0.137453131067401
D413 -D418 		-0.139685970570463
V409 -T515 		-0.140851944641835
L519 -V535 		-0.14093021450824
G407 -T517 		-0.14111656067346
R523 -V535 		-0.143651459432091
A521 -H529 		-0.144666129858746
A530 -L536 		-0.148636550029348
R523 -H529 		-0.150784519725301
T517 -D531 		-0.154288448032298
I518 -I533 		-0.154347819578714
A513 -D531 		-0.15545383591444
Q528 -I533 		-0.157826687882179
Q522 -L534 		-0.158886195290448
G407 -I518 		-0.161464243742637
E401 -I408 		-0.163673318464456
Q522 -L536 		-0.166241864010184
V409 -L415 		-0.166444621569637
S526 -K532 		-0.16830606249106
T517 -I533 		-0.170014514794405
D514 -D531 		-0.171832843905393
R523 -E537 		-0.177174517960527
I520 -V535 		-0.183317289286713
I520 -H529 		-0.1847442840092
V409 -I518 		-0.194629485988677
I520 -L536 		-0.195111442001655
I524 -A530 		-0.195488585321555
Q522 -V535 		-0.195571900925212
I524 -H529 		-0.19559224967855
A521 -A530 		-0.20034132298404
L519 -D531 		-0.205801548038908
Q522 -H529 		-0.208303376505147
L519 -K532 		-0.213923724989872
A521 -V535 		-0.215161299243424
V409 -I520 		-0.215608591630977
I518 -K532 		-0.219418770955766
H529 -V535 		-0.222824090559971
I520 -I527 		-0.224371122227315
I520 -G525 		-0.226638061183078
A521 -I533 		-0.229010060984898
L410 -L519 		-0.23322025301377
I520 -L534 		-0.236324424240086
A521 -I527 		-0.236801860627169
A521 -L534 		-0.239481877050045
R523 -A530 		-0.24487390909342
P399 -G407 		-0.248261437874114
Q522 -K532 		-0.250813286414273
I408 -T517 		-0.267196322122946
P399 -I408 		-0.280001573452711
G525 -I533 		-0.293770423845854
I520 -A530 		-0.296839355283103
D514 -H529 		-0.306769800581918
L519 -G525 		-0.339399586690081
I408 -I518 		-0.341737884497544
G525 -A530 		-0.34373728150814
S526 -V535 		-0.361024776517456
I520 -I533 		-0.378615411157277
L519 -H529 		-0.383234355173417
F406 -T517 		-0.400225714576179
I408 -L519 		-0.416823550238448
I518 -L534 		-0.417897322292867
F406 -T516 		-0.418021643025784
L519 -L534 		-0.450832900544335
A400 -G407 		-0.46977076597704
I518 -H529 		-0.469809711462973
I518 -A530 		-0.478610767420498
P399 -Q404 		-1.01909899221013