[Mon Aug 29 16:51:47 2016] >Input file: TMC9J4I0M1G.pdb >TM segments: 100-111_ 119-140 MAIDEN score = 0.3982 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- F130 -F135 0.744073497886603 E128 -C139 0.694550596294061 Y127 -C139 0.651886704476782 F130 -L136 0.521366354679103 F130 -S137 0.513563730181484 A129 -S137 0.453263866485264 A129 -L138 0.425960938230999 Y127 -S137 0.421657967822871 L110 -Y119 0.320874313527207 D125 -F130 0.318017247740285 E128 -L138 0.281116777657397 L109 -S122 0.210414380158265 C126 -L138 0.191471487963632 S104 -S122 0.177675553526285 S104 -F120 0.133130722912592 S107 -V123 0.131996951168151 I132 -C139 0.131042814677363 R124 -S137 0.127746164152653 L109 -V123 0.125655853306764 Y127 -F140 0.124576671081236 F130 -C139 0.123512650402466 S107 -D121 0.120829080413654 V131 -L136 0.118425223832365 R124 -F135 0.0914052990907313 C126 -I132 0.0882354812904674 L110 -F120 0.0876847465805151 D125 -L138 0.0875883382021576 L108 -D121 0.0866396255079604 L111 -R124 0.0858795462809059 L108 -S122 0.0837486409179373 Y127 -L138 0.0826509050165916 L108 -V123 0.0808715900209813 L108 -Y119 0.0777596775034555 Y133 -L138 0.071385104229881 S134 -C139 0.0688739423705345 C126 -S134 0.0670480069817145 C126 -L136 0.0669141135248079 V131 -C139 0.0635270903546115 D103 -D121 0.0628711300860116 C126 -F140 0.0622213060967827 R124 -L136 0.0533426769037235 S107 -Y119 0.0433376414755746 E128 -F135 0.0410149127550881 R124 -V131 0.039423539608201 D125 -S134 0.0363905491480638 Y127 -S134 0.0357791246719232 R124 -F130 0.029316328399255 D103 -S122 0.0251590217350579 D125 -V131 0.0237912252335901 S104 -D121 0.0120697516679958 L110 -V123 0.00765602256362996 W105 -S122 0.0011343883905397 L110 -R124 0.000801119185117827 L106 -F120 0.000122009358713093 I132 -S137 -0.00481405563003356 D125 -C139 -0.0070483605210736 C126 -C139 -0.0137972460254758 E128 -F140 -0.0142265930573386 C126 -V131 -0.0247998283897939 S107 -S122 -0.0248132421050746 L106 -S122 -0.0257741409873571 L109 -R124 -0.0264346257116017 E128 -S137 -0.0276721814235898 E128 -L136 -0.0297485628063168 L111 -D121 -0.0321358294600441 D125 -I132 -0.0335223369463764 W105 -D121 -0.033658572093302 S134 -F140 -0.0339695061840608 D125 -L136 -0.0351493736628753 W105 -F120 -0.0363229128598497 W105 -V123 -0.0448089171593118 R124 -L138 -0.0530405399728013 D125 -F140 -0.0552688082738451 A129 -F140 -0.055706943953434 L108 -F120 -0.0573200529217521 L109 -Y119 -0.0631713800356288 D125 -F135 -0.064972857187068 E128 -S134 -0.0711877396499038 R124 -F140 -0.0730126606708253 F102 -S107 -0.0774761345756929 L111 -Y119 -0.0779097067862082 Y133 -F140 -0.0812105010733148 I132 -L138 -0.0867849092316102 S107 -F120 -0.0871039390354775 L106 -D121 -0.0895978835900055 D103 -F120 -0.0899462519572896 L106 -V123 -0.0907227481222801 L111 -F120 -0.0918023003076721 R124 -A129 -0.0930328366182529 D103 -L108 -0.0991192862318633 Y127 -Y133 -0.102423544310582 V131 -S137 -0.103932026427501 Y127 -F135 -0.107491364295844 D125 -S137 -0.108323421814677 C126 -F135 -0.112163136014254 L109 -D121 -0.119213229907988 F135 -F140 -0.120269188747547 A129 -L136 -0.121560791534257 V131 -L138 -0.128886726284526 V123 -F130 -0.130689489209523 A129 -C139 -0.155588065917172 Y127 -L136 -0.162426798456583 S104 -L109 -0.165808203045913 I132 -F140 -0.170958068591367 L109 -F120 -0.176805397761992 Y127 -I132 -0.181600559308699 L111 -V123 -0.192350661603282 L110 -S122 -0.199147101930089 E128 -Y133 -0.203061807607805 D121 -C126 -0.206425327573317 C126 -Y133 -0.219585003967449 D125 -Y133 -0.220515808986137 C126 -S137 -0.226549552884713 L111 -S122 -0.237308138472613 L110 -D121 -0.254070865742903 Y133 -C139 -0.337644654595006 F130 -F140 -0.353651128583831 A129 -F135 -0.357000897769529 F130 -L138 -0.370076531241146 V131 -F140 -0.371412392872821 A129 -S134 -0.505272566976892