[Fri Aug 26 16:46:55 2016] >Input file: TMC9JUY7M1D.pdb >TM segments: 79-106 MAIDEN score = -0.1481 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L84 -Y90 0.638470839786294 V94 -T100 0.483496333548795 T82 -Y90 0.456865073979541 V94 -V99 0.416647946995072 Y90 -V99 0.313164129767079 L84 -Q89 0.250227394926176 L84 -T93 0.242099033716805 T93 -T100 0.225677575391151 V81 -S86 0.211902827001532 T82 -N92 0.200153913752302 M91 -Y98 0.185003949191674 T82 -T101 0.181968623420218 T82 -T100 0.155506172325365 M91 -V99 0.154735764330686 T82 -T97 0.152946250526561 V79 -V94 0.145848325859712 Y90 -Y98 0.12765416569312 Q87 -S96 0.123700198929992 T93 -N102 0.120231051816228 S86 -V94 0.116481054151733 A80 -T97 0.114392907905913 Q87 -N92 0.113792252316502 A80 -S85 0.112385637097256 V81 -V103 0.11091513820941 A80 -T100 0.0993026504860679 L84 -N92 0.0989508143951312 T82 -Q89 0.0984862408692067 L84 -V103 0.0942992998709462 N92 -Y98 0.0849912259987766 S85 -T93 0.0811490329773395 S96 -T101 0.0808533133832302 M91 -T100 0.0806934402297217 V81 -Q87 0.0699331107504332 M91 -N102 0.0695362275215547 V81 -T93 0.0691540414408242 A80 -S86 0.0650252107510365 S83 -N92 0.0594227217112267 N92 -V99 0.055957947728325 I88 -T93 0.0555194313907048 S86 -N92 0.0548362016990502 S85 -N92 0.052495386862792 V79 -V99 0.0477381222282025 V94 -N102 0.0418409575092784 A80 -Y90 0.0408788798742052 T82 -M91 0.0362279798853624 Y90 -N102 0.0336280569260186 V79 -T100 0.0227053857545707 Q89 -V94 0.0223223850681995 V79 -T97 0.0107841818704086 V79 -Q89 0.00514179155217409 A80 -N92 0.00476847502264155 V81 -T101 0.00220465054046137 V81 -V94 -0.00234712315653685 Y90 -T101 -0.00394462313384913 Q87 -V95 -0.00509997298178044 V81 -T100 -0.0069884137277898 T97 -N102 -0.00702830473727589 V79 -T101 -0.00732163953726239 L84 -S104 -0.00795704997855839 S83 -T93 -0.00922363378478464 Q89 -T97 -0.00929090313519954 L84 -V94 -0.0128147521284685 A80 -V94 -0.0136692564058696 V95 -T101 -0.0155721191583167 S85 -Y90 -0.0156963785191504 V81 -N92 -0.019372352248672 Q87 -T93 -0.0194686040680691 S83 -V103 -0.0203074859188751 S86 -V95 -0.0218415829923159 T82 -Q87 -0.0220086702091512 S85 -V94 -0.0227074159537599 V79 -S96 -0.0241825198891328 T82 -V103 -0.025035690819232 A80 -S96 -0.0284544966887204 Y90 -T100 -0.0297072724916773 I88 -S96 -0.0313064579315276 Q89 -T100 -0.0313251469489355 V81 -Y90 -0.0330777315898043 T82 -V94 -0.0398218707386375 V81 -T97 -0.0406580062584698 L84 -T101 -0.0412977947960176 T82 -S96 -0.041559774102579 I88 -T97 -0.0427388610201243 A80 -T101 -0.0440182707727667 V94 -V103 -0.0441848396098677 S83 -Y90 -0.0465153047569942 V81 -M91 -0.0469666632877814 L84 -T100 -0.0476451900944697 A80 -Q89 -0.0484151206888194 V79 -Y90 -0.0554741805657484 A80 -T93 -0.0609954150479322 S83 -M91 -0.0627030726729831 N92 -T97 -0.0683559475971137 Y90 -V103 -0.069336951461437 Y90 -S96 -0.0705274122475428 S85 -M91 -0.0724065816392316 V79 -T93 -0.0796167530190222 Q89 -S96 -0.0812927038586875 T93 -Y98 -0.0955393852616111 S86 -M91 -0.098002763392822 N92 -T100 -0.100340121788593 V95 -N102 -0.10406275486634 S86 -T93 -0.107380242073903 V81 -Q89 -0.109690168176168 S83 -V94 -0.110169272643182 S83 -Q89 -0.125891673795316 M91 -T101 -0.130962990470671 M91 -S96 -0.131225744240396 V81 -I88 -0.131758233595198 Y90 -T97 -0.132756896682269 V95 -T100 -0.164768855702444 T82 -I88 -0.17767419787203 S83 -I88 -0.178542078382998 T93 -V99 -0.189233251391053 L84 -N102 -0.190233128481601 I88 -V95 -0.194455952218048 Q87 -V94 -0.240935291196677 V94 -T101 -0.254905475719406 Y90 -V95 -0.258961273610647 L84 -M91 -0.308548762535213 M91 -T97 -0.326701228149605 T82 -T93 -0.363657932300772 I88 -V94 -0.409508878485592 Q89 -V95 -0.42153114366802 T93 -T101 -0.433519306150524