[Mon Aug 29 16:57:09 2016] >Input file: TMC9JYN8M1G.pdb >TM segments: 33-47 MAIDEN score = -2.6659 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L35 -G40 0.267740922843935 T33 -N39 0.129863869948919 R36 -A42 0.0616188674085767 L35 -A42 0.032812644634469 N37 -A42 -0.00469027782612919 T33 -A42 -0.00878718932853406 G34 -S41 -0.0234818580545202 N39 -G44 -0.0352465339909029 G34 -I43 -0.0390525726435307 T33 -S41 -0.0437756912807408 R38 -I43 -0.0523464959433946 R36 -S41 -0.0812847961451685 G34 -A42 -0.0969273448531178 L35 -S41 -0.11019434370927 T33 -R38 -0.202745832807554 T33 -G40 -0.308921895383306 G34 -N39 -0.88719160376856 G34 -G40 -1.26332568987775