[Fri Aug 26 16:53:51 2016] >Input file: TMD0IXR3M1D.pdb >TM segments: 710-748 MAIDEN score = 15.5456 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- P727 -E743 10 I714 -L721 1.10143831606267 V728 -S742 0.953842488942223 Q716 -L721 0.917903187050552 I714 -S720 0.852383390953172 R723 -V728 0.783000435723674 L733 -P738 0.772557938243213 Y729 -V740 0.725468917773687 V730 -L741 0.715243310277284 P727 -L744 0.697020984356549 V728 -L741 0.655927902324335 Y729 -L744 0.610803863414145 L731 -V740 0.583999488096488 L731 -V739 0.576331930482208 V726 -E743 0.564929442741192 V728 -L744 0.523475043407446 V730 -V740 0.506168918176632 L731 -Q737 0.475630252403061 I714 -G722 0.451097160299563 G725 -S742 0.450408782349164 L731 -P738 0.444534870994072 I714 -Q719 0.436441926148227 L718 -S724 0.433650262309973 R723 -S742 0.398952994909563 V730 -V739 0.392374644830022 T715 -S724 0.386378882306121 L721 -V740 0.384392725080937 G725 -E743 0.340221279231586 T715 -L721 0.327711200615244 D711 -R723 0.326307988790942 A713 -L721 0.297379461422018 T715 -P738 0.294420519775602 Y729 -E743 0.268828730808548 R723 -E743 0.262967696579628 V730 -P738 0.255107663019029 S720 -Q737 0.251736960056995 V728 -V740 0.239228385135297 G722 -Y729 0.232533174962237 P727 -S742 0.230543432895456 I714 -V740 0.220703680232651 L731 -L741 0.208546897325234 L721 -V739 0.208178760774779 Q719 -P738 0.201536072017742 S720 -K736 0.197344164368622 D711 -P727 0.173288855065323 R723 -P738 0.170916037594511 S724 -Y729 0.167041487518285 Y729 -S746 0.165480310545842 L721 -V730 0.159196790217004 Q719 -G725 0.152722538349044 P712 -Q719 0.149913522148876 S720 -V739 0.138139570734686 A713 -S724 0.136285577477423 S724 -V740 0.135787495921759 S720 -V728 0.135557322982523 V730 -L744 0.128359052368971 Q719 -S742 0.12350977987654 T715 -S742 0.121634054617957 L731 -L744 0.120164507492389 G722 -E743 0.118011954187112 S720 -V730 0.115750127306386 G722 -L741 0.114015611826814 L731 -K736 0.113986086830154 V730 -S742 0.112349054268636 D711 -A717 0.112259454354632 L721 -L731 0.111306417526009 Q716 -P727 0.111207450089585 V740 -L745 0.0998881175722912 Y732 -L741 0.0988365495240486 Q710 -L718 0.0927420346655736 D711 -Q716 0.09261094445624 T715 -V740 0.0908517414817798 Q710 -R723 0.0896946604773996 P712 -Y729 0.0888479399144768 V730 -G735 0.0870125934896399 D711 -V728 0.0869257625922568 R723 -L744 0.0860378071921434 V726 -L745 0.0831881323537136 L731 -L745 0.0803185189497704 V730 -L745 0.0745432928364283 R723 -V739 0.0717594986258969 T715 -L741 0.0691586456979326 Q719 -V740 0.0689826569225929 I714 -Q737 0.0682209356394471 Q719 -V728 0.0673771159625115 L718 -V726 0.0649148160611315 Q719 -V726 0.0642255719984324 P727 -S746 0.0582682621710866 I714 -G725 0.0578482442976467 L721 -E743 0.0575651589418513 T715 -Y732 0.0567296644398083 L733 -L741 0.0564096004444714 A717 -G722 0.0556758869902192 S720 -S742 0.0554525783542545 A713 -V726 0.050790664790842 Q710 -L721 0.0505735571390202 L718 -P727 0.0488929436643764 L731 -S742 0.048169256921816 V726 -S742 0.0478016693807302 D711 -S724 0.0452633971622823 D711 -L718 0.0435662716483707 T715 -P727 0.0413289805767594 I714 -S742 0.0409484158707367 S720 -G725 0.0408268542688354 P712 -V728 0.0407920507703108 Q716 -S724 0.038995791798774 V728 -E743 0.0378024148906304 Q710 -G722 0.0336854527982586 G735 -V740 0.0335442325585218 S724 -L741 0.0266711786376331 L718 -R723 0.0245928917382416 Q716 -V728 0.0217862179761243 D711 -G722 0.0176463249700056 Y729 -Q737 0.0148542710721991 T715 -V728 0.0136652575000502 Q716 -S742 0.012388191665601 I714 -L741 0.0112353504529166 Q716 -V740 0.00899689428372802 A713 -Q737 0.00781699803000802 Q716 -V730 0.00727691616779474 A713 -P738 0.00705802499983343 P712 -P727 0.00649499892058181 V728 -P738 0.00628320156392403 S724 -E743 0.00587507377007851 T715 -V739 0.00107125024161148 V726 -V740 0.000291088983340515 Q719 -V739 -0.00024711951395151 L721 -V728 -0.000736503064917571 A717 -P727 -0.000929246673663009 V726 -L744 -0.00407499509013576 L741 -S746 -0.00445101052950925 A713 -Q719 -0.00489876053712646 Q716 -E743 -0.00509873629755453 A713 -V728 -0.0054042762436175 I714 -K736 -0.00556752944987737 A713 -V740 -0.00583455232537133 G722 -V728 -0.00780035033953652 L733 -V740 -0.00923645135761575 I714 -R723 -0.0107237980256134 L718 -V728 -0.0114095814810238 E743 -S748 -0.0128687633829788 I714 -P727 -0.0129454291422115 Q710 -Q716 -0.0145233300228811 A713 -L718 -0.0146665868304701 V728 -S746 -0.0151500116030969 T715 -V726 -0.0153471433293655 A713 -G725 -0.0162662998187404 A717 -V728 -0.0173434996034754 P712 -G725 -0.0183193538438456 D711 -G725 -0.0239708292760359 S720 -V726 -0.0240112517773601 I714 -Y729 -0.0247553351649314 I714 -S724 -0.0253992838363342 A713 -V730 -0.02950336967472 P727 -V739 -0.029536310113548 Y732 -V739 -0.0300757291120348 Q710 -T715 -0.0325915927039543 G725 -L745 -0.034986333439616 L731 -E743 -0.0382212950929435 G722 -V739 -0.0390975095278812 T715 -Y729 -0.039732723408169 P727 -V740 -0.0424140496237291 D711 -Y729 -0.047507226000477 R723 -Y729 -0.0484244386784645 S742 -K747 -0.0524437013502794 Q710 -Q719 -0.0567130526828583 Q719 -V730 -0.0567240726048024 D711 -P738 -0.058678220247421 L718 -S742 -0.0596174000558738 A713 -S720 -0.0633949094893813 S720 -Y732 -0.06465524593726 G722 -P738 -0.0664325072975989 G722 -P727 -0.0664798374811504 P712 -V726 -0.0671412280845254 Y729 -K736 -0.0708956899490891 G725 -V730 -0.0719593404460364 Y729 -K747 -0.0719729612520442 P734 -V739 -0.0739395332354906 V730 -K736 -0.0768871802183266 P712 -V730 -0.0772174198780875 Y729 -V739 -0.0813707868062885 D711 -V726 -0.0843241015417702 S720 -V740 -0.0859180062328644 S720 -L741 -0.0875552117327678 Y732 -S742 -0.0876277972942701 L721 -Y732 -0.0906600491835738 L721 -P727 -0.093818025582924 P712 -S720 -0.0949636398727169 T715 -L731 -0.0950603716935378 Q710 -A717 -0.0953122611770496 T715 -V730 -0.0955569524731281 D711 -S720 -0.0958509744577924 Q719 -P727 -0.0976267722483541 T715 -E743 -0.0978546867033989 Q716 -Y729 -0.0998438953334708 S724 -L744 -0.100591239459559 A717 -S742 -0.100595237385252 A717 -E743 -0.100735572694683 P727 -K747 -0.101981675561828 L721 -Y729 -0.103011833891163 V728 -V739 -0.103019540009465 Y732 -V740 -0.103132419758705 L721 -P738 -0.103470288302031 S724 -V730 -0.103652457299469 L718 -V740 -0.103930308354374 R723 -V740 -0.104418923071371 P712 -L718 -0.105790239485816 R723 -V730 -0.10775631739444 G722 -V740 -0.112164478914215 A713 -G722 -0.112643888616869 V726 -L741 -0.115773352512051 G725 -L741 -0.119482394227203 Q716 -R723 -0.121114950339527 L718 -G725 -0.123929973630935 D711 -V730 -0.124474139097796 L721 -K736 -0.125766556575087 A713 -K736 -0.12653000298168 Q716 -G722 -0.1314269476541 G722 -V730 -0.132220872913663 G722 -S742 -0.133319985601744 P712 -S724 -0.134627897851056 R723 -L741 -0.136401057662269 D711 -L731 -0.136555326167911 Y729 -L745 -0.136860076326353 S720 -L731 -0.141364839721473 G725 -V740 -0.141712606840424 A717 -V726 -0.143694360607466 S724 -S742 -0.144013340572845 Q710 -S720 -0.14522055105383 D711 -Q719 -0.146522546201915 V728 -K747 -0.148420174318368 Y729 -P738 -0.150855832985836 S720 -Y729 -0.152631527460868 S720 -P738 -0.157751158050925 L733 -V739 -0.159319060296557 L721 -Q737 -0.160377950581263 I714 -V728 -0.161515147671732 I714 -L731 -0.161907681529185 R723 -L731 -0.164931727260257 V728 -L745 -0.165870569783735 Q719 -S724 -0.168950310749483 I714 -P738 -0.178208106476262 I714 -Y732 -0.181071876718151 I714 -V726 -0.193014727956926 L741 -K747 -0.203597263194151 I714 -V739 -0.204531969644339 D711 -V740 -0.2062557224365 P712 -G722 -0.206860378597295 P727 -L741 -0.224520856624305 T715 -S720 -0.23021555881644 L721 -V726 -0.231020032844802 A713 -R723 -0.252284598764384 D711 -L721 -0.25626434056301 Y732 -P738 -0.266947208134088 A717 -R723 -0.269880373357784 Q716 -G725 -0.277025223604309 D711 -Y732 -0.291865486722848 V730 -E743 -0.297932815584368 T715 -G722 -0.315563096739839 G725 -L744 -0.320189466259461 P712 -L721 -0.331845399194231 T715 -G725 -0.339932575978869 L721 -S742 -0.341202488818918 P712 -A717 -0.351628917043905 V730 -Q737 -0.387276542176685 A717 -G725 -0.397655136831822 Y729 -L741 -0.403103483805304 I714 -V730 -0.418238139529095 A717 -S724 -0.434060015216339 L721 -L741 -0.458841153652571 Q716 -V726 -0.459984132610482 Y729 -S742 -0.462962253848144 P712 -R723 -0.475837610886997 P727 -L745 -0.484681372922139 Y732 -Q737 -0.50817630768373 T715 -R723 -0.554347618988104