[Fri Aug 26 16:56:40 2016] >Input file: TMD0TTH9M1D.pdb >TM segments: 607-618_ 631-645 MAIDEN score = 12.0690 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- D611 -D636 10 V610 -S639 1.39873027325351 V610 -G635 0.603671324740651 L608 -S639 0.571291602941927 L608 -K637 0.562307411179959 V610 -W638 0.545066799691037 Y640 -K645 0.511182136939739 D611 -Y640 0.439728166309493 V610 -K637 0.378852627230717 V610 -Q642 0.369027509042988 V610 -D636 0.337096835539658 N612 -W638 0.316046736210116 N612 -R643 0.30760721829516 Y609 -P615 0.303049893390937 D636 -V644 0.297422096304297 Y609 -V644 0.291068631311187 T633 -W638 0.284146703387684 V610 -T633 0.274686498611524 T607 -W638 0.273679623224047 T614 -G635 0.256546961260664 V610 -R643 0.255088653863451 V610 -Y640 0.247737127373396 K613 -W638 0.240264913911318 S639 -V644 0.23818472771517 V610 -V634 0.236477274865589 T607 -Q642 0.234599286564674 T614 -W638 0.220516871769508 K637 -R643 0.220111021723702 V634 -S639 0.207261036452157 V610 -L641 0.200268966250416 N612 -R632 0.183234862539412 L608 -K613 0.180355624278761 K613 -L631 0.175918284433512 D636 -L641 0.167698980923975 K613 -E618 0.1613786712338 D611 -K645 0.158231178151004 R632 -R643 0.154396558380022 L608 -Q642 0.149597911197282 D636 -K645 0.147460544623235 L608 -W638 0.137587509807522 P615 -D636 0.128698351094702 T607 -K613 0.127196984001582 P615 -G635 0.122406772002016 L608 -L641 0.111104754576196 T607 -K637 0.109315217787133 V610 -R632 0.102402549241766 G635 -R643 0.0981234697169615 N612 -L631 0.0966742333401989 K613 -D636 0.0921373863831361 K637 -V644 0.0920718437716039 L616 -V634 0.0920456570717152 T633 -R643 0.0860751511254825 T614 -S639 0.0836797501752371 G635 -L641 0.0811144066333771 Y609 -Y640 0.0794644145630492 N612 -T617 0.0725284647747761 N612 -L641 0.0723387451063808 Y609 -L641 0.070279678258363 T607 -S639 0.0643933450831593 T607 -D636 0.0635925965729545 N612 -V634 0.0549090517929201 T614 -V634 0.0449225375635741 K613 -S639 0.0436713391305474 T607 -Y640 0.0431428412209733 L608 -G635 0.0426279832941354 T614 -T633 0.0326218108479708 V610 -K645 0.032266429311024 L608 -Y640 0.0304709299943031 T607 -R643 0.0284300644837179 D611 -W638 0.0258329591801911 L608 -V644 0.0248054498525558 T607 -G635 0.0223513031990037 W638 -R643 0.0114693310109341 K613 -Y640 0.00968741916137827 L631 -Y640 0.00776703054554417 Y609 -D636 0.000675947931758181 Y609 -W638 -0.00030327241006356 T633 -Q642 -0.00207205323298831 Y609 -G635 -0.00758905057196957 Y609 -R643 -0.0251213471084917 R632 -Y640 -0.0274454385600116 L616 -G635 -0.0330522452166484 N612 -Q642 -0.0400498487860184 T633 -V644 -0.0417486809789196 V634 -Y640 -0.0422017440801792 L608 -T633 -0.0477043673440232 N612 -T633 -0.0493313829203885 Y609 -T614 -0.0508739139257077 K637 -Q642 -0.0556089165253661 D611 -L641 -0.0563254343822033 R632 -S639 -0.0588401441646427 L631 -R643 -0.0605084591236822 Y609 -R632 -0.0629491974198166 D611 -Q642 -0.0647820627211269 L608 -T614 -0.0707886599638385 P615 -V634 -0.0744305714181472 D636 -Q642 -0.0775251193655566 Y609 -T633 -0.080422774278224 K637 -K645 -0.0837657806847512 K613 -V634 -0.085253336242455 P615 -K637 -0.0856673655444626 T633 -L641 -0.0892037781456763 G635 -V644 -0.0924611584414228 S639 -K645 -0.0949562369152253 D611 -V644 -0.0985105569807931 G635 -Q642 -0.102758238639873 L608 -V634 -0.105523023650095 K613 -R632 -0.110587291119753 N612 -S639 -0.111029864999589 K613 -T633 -0.112099542526994 T614 -D636 -0.124113697950533 T614 -K637 -0.125215166811187 T633 -Y640 -0.13411758467465 Y609 -K645 -0.134979031357808 G635 -Y640 -0.14162588996548 K613 -K637 -0.154808573776815 L631 -S639 -0.15702510736608 T607 -N612 -0.165487985809745 D611 -G635 -0.166191544447129 R632 -K637 -0.167725210344282 T633 -S639 -0.188100323184395 D611 -S639 -0.191582348702702 D611 -R643 -0.199550437088066 D611 -R632 -0.202392484247064 W638 -K645 -0.205039393218999 D611 -V634 -0.2055455293157 L608 -D636 -0.206685162067807 L631 -K637 -0.20952823163613 Y609 -S639 -0.210805936384495 V610 -L631 -0.213357444056595 L608 -K645 -0.235517368189374 N612 -Y640 -0.238861389972413 D636 -R643 -0.239067345472515 L608 -R643 -0.255462671217274 W638 -V644 -0.276180636911069 L631 -D636 -0.280505346858301 V634 -R643 -0.28431817331748 D611 -L631 -0.285879416776004 K613 -G635 -0.304750635276783 Y609 -Q642 -0.317105444861547 D611 -K637 -0.32346539171848 Y609 -V634 -0.330038030954474 V610 -V644 -0.344535426017826 N612 -K637 -0.358624589137247 D611 -T633 -0.39989420185035 Y609 -K637 -0.414874785933641 N612 -G635 -0.781788566042241 N612 -D636 -1.0936124550664