[Mon Aug 29 17:09:18 2016] >Input file: TMD0Z9C3M1G.pdb >TM segments: 79-96 MAIDEN score = -1.1064 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- A83 -V88 0.507312724432365 K89 -P96 0.330333319897073 Q79 -R84 0.199918049968698 D90 -A95 0.198580519885637 D86 -V91 0.185250044963475 A83 -D90 0.145125091357223 A83 -A94 0.13282138497374 A83 -A95 0.11122799411789 R87 -A94 0.110208060231262 V85 -A94 0.107686014686116 R84 -V91 0.101277913936651 Q79 -V91 0.087776102650722 V88 -P96 0.0798892400315445 K89 -A94 0.0724252522360889 Q79 -V92 0.0663060484387645 Q79 -V85 0.0597288407329107 R84 -V92 0.058300903238933 L82 -V91 0.0537104139799673 L82 -V92 0.0518362651201318 S80 -V88 0.0478034466621793 S80 -D86 0.043703616077929 V81 -R87 0.0253492032548919 A83 -G93 0.0169501979465905 K89 -A95 0.0103003001851875 S80 -V91 -0.000653975348500868 V85 -V92 -0.00189667733622212 A83 -V91 -0.00329037444990643 Q79 -D86 -0.00625578318434172 S80 -K89 -0.0100699027558258 V85 -A95 -0.0158513752823737 V85 -V91 -0.0180859470458365 Q79 -V88 -0.021478626747383 D86 -G93 -0.0223117682662965 R87 -G93 -0.0245437924912606 R84 -D90 -0.0431753157821002 V81 -V91 -0.0431972566723049 R87 -V92 -0.0436548962439662 R84 -K89 -0.0442889645021394 S80 -R87 -0.0586787007378533 S80 -V92 -0.0613880986603585 V85 -G93 -0.0691385759825334 L82 -K89 -0.0813309103284832 Q79 -A95 -0.0819601208159884 L82 -R87 -0.0841372930916009 L82 -D90 -0.0853212796438603 D86 -V92 -0.088161505905501 L82 -A95 -0.0892732295264027 V81 -V88 -0.107149234545174 V81 -D86 -0.107786788645476 S80 -V85 -0.117030637606721 R87 -A95 -0.137314840262882 V88 -A95 -0.147905606949915 V88 -G93 -0.156455178838898 V91 -P96 -0.212726826390792 A83 -K89 -0.258527972756025 V85 -D90 -0.289249671838236 L82 -V88 -0.297497406163091 V88 -A94 -0.340938768236614 A83 -V92 -0.363232510917103 D90 -P96 -0.376290096791574