[Mon Aug 29 17:10:54 2016] >Input file: TMD1K070M5G.pdb >TM segments: 591-597_ 631-645 MAIDEN score = -3.1089 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- A635 -F640 0.542443440088018 G634 -Y641 0.358797063032926 V591 -Y641 0.231156076092181 G634 -F640 0.230734308039241 N636 -Y641 0.20816338822017 F633 -Q638 0.204257392154202 T594 -Q638 0.151049403964649 L595 -V642 0.124734916933345 L595 -L643 0.123766023883491 G634 -P639 0.123087270262651 L595 -P639 0.121297298725958 A637 -V642 0.118907048987235 V597 -G634 0.110638190132686 K632 -I644 0.108111301568718 L592 -D645 0.102920491091834 L595 -I644 0.0907236755362203 F633 -Y641 0.0849628378955352 T594 -F633 0.0682528325570569 V597 -V642 0.0548670252159935 V597 -Q638 0.0548291725223446 S631 -N636 0.0541623056115075 L595 -A635 0.0504276362180276 L592 -L643 0.047198029735548 V597 -N636 0.0409298885020482 V597 -Y641 0.0340090430889157 T594 -L643 0.0333360233112634 L595 -A637 0.0328293082913578 N636 -V642 0.0326985987307045 T594 -A635 0.0324928966416478 S631 -A637 0.02529704168367 K632 -V642 0.0245862263944087 L595 -G634 0.0217760631781787 I593 -Q638 0.020621454338162 L592 -F640 0.0151850915866398 G634 -L643 0.00092719588641943 F596 -A635 0.000474257749737417 L595 -Q638 -0.0186129685580199 S631 -V642 -0.0194228293723484 A635 -L643 -0.0258281286901383 I593 -D645 -0.0335615947085542 F596 -F640 -0.0336041715196238 T594 -I644 -0.0427821214793442 L595 -F633 -0.0470862052943373 V597 -F633 -0.0508615989813483 F596 -A637 -0.054804777822274 Q638 -L643 -0.0565377041245538 K632 -L643 -0.0580036038511693 F633 -I644 -0.0599574587044218 F633 -P639 -0.0606336897795048 I593 -F640 -0.0639065491874575 L595 -Y641 -0.0668468701203357 I593 -F633 -0.0713960678771635 L595 -N636 -0.074141513342795 T594 -Y641 -0.0770342975663287 F596 -F633 -0.0776062180182162 K632 -Y641 -0.0842708309599489 V597 -P639 -0.0843914667372028 A635 -Y641 -0.0855030118344873 T594 -P639 -0.0858892279458205 F596 -Q638 -0.0907424760213589 F596 -P639 -0.0916042718506596 V591 -V642 -0.0976323267666199 L592 -Y641 -0.101897511959259 I593 -P639 -0.102979004607294 F596 -N636 -0.105058353853996 V591 -D645 -0.122488157871341 I593 -I644 -0.127200122798129 F633 -L643 -0.130580968439699 G634 -V642 -0.130979207793166 F596 -V642 -0.141040886155221 I593 -L643 -0.142289944535846 I593 -Y641 -0.142694490248619 K632 -A637 -0.15645962801965 V597 -A635 -0.156799540123197 T594 -V642 -0.157099816909074 L595 -F640 -0.166098436639109 F596 -Y641 -0.166382787003212 I593 -V642 -0.166524554882822 A635 -V642 -0.16839006837272 F633 -V642 -0.183720238363563 F633 -F640 -0.222810822602396 T594 -F640 -0.241695306994201 L592 -V642 -0.251264546195138 V597 -F640 -0.26107748428149 V591 -I644 -0.26804706447718 L592 -I644 -0.314921720037451 V597 -A637 -0.338621834520384 V591 -L643 -0.35065073802416 K632 -F640 -0.359124220680749