[Mon Aug 29 17:13:37 2016] >Input file: TMD1ZZM3M16G.pdb >TM segments: 259-271_ 275-283_ 287-297_ 301-309_ 317-323 MAIDEN score = 55.2234 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- S292 -W304 10 C281 -W317 10 H282 -W317 10 V261 -C281 10 N276 -Y323 1.47506907574067 R260 -C281 1.16935768984632 C281 -W293 1.13669365112797 V283 -W317 1.03605257864831 P259 -V283 1.02659369476033 F279 -I320 1.00053347809713 W293 -I320 0.978354144721923 W293 -T303 0.883762915716613 F264 -V277 0.863248728113342 L294 -H302 0.817518328012995 V261 -F279 0.777744780875636 V283 -E288 0.747902441285615 Q266 -V277 0.741084230903413 F264 -F279 0.70519063534156 V291 -W304 0.696721529637557 V291 -L305 0.67085123530824 L305 -A318 0.669647384995847 Q290 -I307 0.608279068203116 V263 -F279 0.565659300792012 P259 -H282 0.529965463439785 W293 -W304 0.529010319032267 W293 -N301 0.515950492389576 F279 -S321 0.499388380433818 Q308 -A318 0.45943980650676 V277 -V322 0.459404478624669 I307 -N319 0.44957544855191 F279 -W293 0.44629239693881 G280 -W317 0.435181097592187 Q290 -W304 0.427187945143231 P289 -Q308 0.419288813867637 P259 -E288 0.416011946526365 Q270 -N276 0.413488927685604 P259 -C281 0.405855480708801 V269 -N276 0.402360868965621 S262 -F279 0.400348646205153 I307 -A318 0.395429430497503 Q290 -V306 0.3939359729775 V261 -W293 0.387590297310846 P265 -N276 0.375655318810202 P287 -Q308 0.371545121420815 F264 -S278 0.370016703469287 R260 -V283 0.368137169227355 V291 -W317 0.351157820745611 P265 -N319 0.350947533897344 S267 -V277 0.348434909240149 V263 -Y323 0.348265892556323 P265 -V277 0.339429812708715 P259 -P287 0.33849176791268 V291 -V306 0.338449699595894 V291 -Q308 0.33527731320625 P259 -W293 0.32662483668125 Q308 -W317 0.325277116479555 V263 -V277 0.30652890642043 S292 -L305 0.303325303214907 H282 -A318 0.295917396277829 P265 -S278 0.289394533049311 S278 -V322 0.283180285916862 V261 -V283 0.277988333280716 G280 -L305 0.277104475763565 P289 -T303 0.276903922396485 P259 -P289 0.274626655302535 R260 -G280 0.264476815661878 S267 -N276 0.263275412651252 C281 -T303 0.252439511059382 S267 -G275 0.250267441995338 N301 -S321 0.248627750523489 E296 -T303 0.23805676052121 C281 -V291 0.236020312701712 P287 -L305 0.230028246628859 R260 -Q266 0.228066346841817 E288 -V306 0.219196503281048 F264 -Q270 0.213184771041798 P265 -Y323 0.212731777741428 C281 -Q290 0.208202038709567 G280 -V322 0.208039395433766 S267 -G280 0.206311304443506 Q266 -N276 0.204786251611065 S278 -I320 0.202384669639722 S262 -Q268 0.201854130888142 R260 -N319 0.199620701624943 Q268 -F279 0.195822429235053 H282 -Q308 0.195424963109151 L294 -T303 0.184073982096371 R260 -W293 0.182280814212567 F279 -T303 0.181916318553691 F279 -V291 0.177140104230788 S262 -C281 0.176995474239163 R260 -Q308 0.174588461501108 Q266 -S321 0.171267938125904 R260 -V291 0.170946842875892 Q268 -N276 0.16876091532091 R260 -S292 0.167659799917496 V263 -Y295 0.167596953951805 W293 -L305 0.166603196212858 L305 -I320 0.165216321215891 F279 -V322 0.164959177348454 L305 -N319 0.161746388266607 T303 -I320 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