[Mon Aug 29 17:15:41 2016] >Input file: TMD2A3P9M2G.pdb >TM segments: 143-159_ 193-199 MAIDEN score = 0.1140 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- Y151 -C158 1.11536282453026 Y151 -V159 0.802709876059337 F150 -C158 0.562699553066868 V153 -V159 0.220594870838107 T152 -C158 0.218803985377951 Y151 -R195 0.21095991846371 T152 -V159 0.18802621678821 V153 -C158 0.178780884916106 V153 -V196 0.168416470970761 V153 -R195 0.159442349733568 C158 -R195 0.102185012419834 Y151 -N197 0.0998739451798425 Y151 -Y194 0.0987666386818593 F150 -D198 0.0981680498411129 N155 -R195 0.0951830968450786 T149 -N197 0.0893290636224084 V159 -Y194 0.0860521333212105 T149 -V196 0.0690888437305978 V148 -R195 0.0685300815768777 L147 -Y194 0.0633679154249984 T152 -S199 0.0623131408488544 F150 -S199 0.0588645814549915 C158 -Y194 0.0564256864526311 T152 -K193 0.0544070874777725 W154 -V159 0.0528890010138783 V148 -K193 0.0314183647085995 F150 -N197 0.0310951891648361 V159 -K193 0.0254331464335715 V153 -K193 0.0244293957785374 V153 -Y194 0.0232413358593 V153 -N197 0.0214087508380385 L147 -V196 0.0120840846068533 F150 -A157 0.00424054198871993 V148 -V159 0.000864932747515645 T149 -P156 0.000336405461538902 T152 -D198 -0.0108285681790647 C158 -K193 -0.0150989827835852 T152 -R195 -0.0325107603364323 W146 -Y194 -0.0384387241980558 V148 -C158 -0.0394112212691011 T152 -Y194 -0.0412585907533056 V148 -D198 -0.0414488787327238 T149 -W154 -0.0425063089564339 T149 -D198 -0.0480903770919552 L147 -K193 -0.0520772552415547 F150 -V196 -0.0550944496359236 Y151 -D198 -0.0601932981430124 V148 -V196 -0.0623488289857725 V148 -N197 -0.0636977449800225 T149 -A157 -0.0665961173602714 T149 -N155 -0.0704015691043129 T149 -C158 -0.0709605895736054 F150 -N155 -0.0718980271181106 F150 -K193 -0.0736549421808235 Y151 -S199 -0.0802979249570761 T152 -A157 -0.0822477413135905 T149 -Y194 -0.0850825725338258 T152 -N197 -0.0853651014936947 L147 -C158 -0.0875685788879541 Y151 -P156 -0.115035083872537 F150 -P156 -0.115337809125758 Y151 -K193 -0.115499113162782 T149 -R195 -0.133630137071935 F150 -R195 -0.149502762732278 L147 -R195 -0.153529830956837 W154 -R195 -0.155350592259827 F150 -Y194 -0.168332210731058 T149 -V159 -0.186373399042467 T152 -V196 -0.218561007172677 T149 -K193 -0.252813063649725 V159 -R195 -0.271077110859359 D143 -V148 -0.271732426915964 Y151 -A157 -0.332130124207861 V148 -Y194 -0.334008189726599 Y151 -V196 -0.337842524129909 F150 -V159 -0.35397411655498