[Fri Aug 26 17:11:56 2016] >Input file: TMD2B703M1D.pdb >TM segments: 64-83_ 142-169_ 171-189 MAIDEN score = -14.9179 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- Y154 -F159 1.00178019644902 A148 -M153 0.674726297738105 S173 -F178 0.503553209606171 F171 -A177 0.492613750075367 R145 -M150 0.405038450877128 T144 -M150 0.364549778598898 A180 -A187 0.334366102478586 G172 -A177 0.280226092519887 M150 -G155 0.261989166964399 I64 -V70 0.232931468429549 F171 -A180 0.231295759942816 G146 -Y154 0.229692889706484 A152 -G157 0.224483943921314 R145 -M153 0.217878593497746 T144 -G155 0.210155923868156 L149 -Y154 0.208237981172349 L149 -V156 0.207371745995574 S151 -V156 0.206718792286626 W174 -V179 0.188862782061092 R78 -W83 0.180018573640893 R175 -A180 0.179970062265995 N147 -G155 0.17912539818365 V76 -R82 0.169609726424559 R175 -V183 0.164464393427377 G165 -G172 0.162095163503084 W143 -L149 0.158510008552875 A163 -G172 0.156368813039981 L149 -G155 0.15566593274026 T144 -L149 0.155472715891587 I64 -A72 0.149781539990768 G165 -M181 0.144143153434434 I71 -L79 0.141177799112214 A169 -V179 0.138296330031411 I64 -I71 0.13819168894539 G172 -M181 0.135100925019197 G166 -M181 0.134554672447932 A148 -N158 0.133253980342868 A169 -A182 0.131063439228233 G172 -A180 0.128572859149385 S173 -A182 0.123517799985342 V179 -A187 0.122535814211689 Y65 -A72 0.121423485866018 S151 -V160 0.119804574988253 T144 -S151 0.119782072048924 L142 -L149 0.11856834124606 R145 -A152 0.116187401077172 L164 -M181 0.113840839599765 A72 -L79 0.113008611592163 L75 -A81 0.109484796667018 G166 -A177 0.108635643603676 A169 -R175 0.105732062303141 L167 -S173 0.103749689222085 G146 -A152 0.103634655959709 M153 -N158 0.10361985990795 G165 -F178 0.103353135689453 A148 -G157 0.10290787434348 G157 -G165 0.102576699722411 V160 -A169 0.100801378354065 M74 -A81 0.0991053894959624 G165 -A177 0.0964589702868731 R145 -G155 0.0933955189657474 W174 -A182 0.0932986826075237 L164 -I184 0.0915159843034185 F171 -A182 0.0907751459212927 F159 -L164 0.0887491491489927 G155 -V160 0.0875597199344877 V160 -G165 0.0855418368347234 V156 -A163 0.084268902186512 M153 -F159 0.0828585282279199 L167 -G172 0.080104991587909 T144 -M153 0.0765717851266838 S77 -W83 0.0743930962572374 M153 -P162 0.0706880733871309 R145 -S151 0.0702987970725805 A163 -F171 0.0689465070848778 V67 -L75 0.0684941546582536 F168 -A185 0.0649760808959494 G157 -L164 0.062568578292387 A180 -C188 0.0580109363106547 W143 -S151 0.0574744647718095 L142 -A148 0.0567805574567137 A169 -A185 0.0567223509591945 G166 -S173 0.0534329394752002 I71 -R78 0.0500339386028958 A152 -G161 0.049231069145395 V67 -V76 0.048870368415284 L75 -L80 0.0476831990926751 A169 -I184 0.0471936839781915 L66 -A169 0.0467052935786034 G146 -G155 0.0465157308617155 A177 -I184 0.0459772626841985 V70 -R78 0.0454960284847801 G165 -A182 0.0429367842521722 G157 -G166 0.0408984858625003 A180 -C189 0.0408300708990548 F159 -L167 0.0407182963178725 M150 -G161 0.0404426934885036 L66 -M74 0.0382843287148251 R145 -Y154 0.0379041788938294 G146 -M153 0.0362728659679474 A148 -V156 0.0356422891777699 T73 -R82 0.0335546721169493 T144 -A152 0.0301305148207929 N158 -G165 0.0294475292033436 M69 -S77 0.028251874212709 M69 -A169 0.0272529187620443 L66 -G172 0.026720531555493 V70 -L80 0.0250003795667317 L164 -G172 0.0249487761842904 W83 -W143 0.024617278261216 G172 -A182 0.0244793116084763 L149 -G161 0.0231712954023444 F168 -R175 0.021734309224537 M153 -L164 0.0216463006641447 A169 -A180 0.020196829796578 G157 -L167 0.0169067731940107 L167 -F178 0.0165721822956071 L167 -M181 0.0160677916159537 A182 -C189 0.0151477858402358 N147 -Y154 0.0137895600164164 L66 -G166 0.0120067483990161 A177 -A185 0.0117917887847088 A68 -V76 0.0116651658214901 V160 -F168 0.00445024092527668 F168 -V179 0.00149568374911335 L167 -A177 0.00137388760743384 L142 -S151 -0.000806715402513081 G165 -A185 -0.00095265689033841 G155 -L164 -0.00336139235304622 L66 -I71 -0.00513904142850707 V76 -A81 -0.00547935947957923 F178 -A186 -0.00658047372466264 F171 -V179 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-W174 -0.0691119917210532 M69 -G166 -0.0722820352774596 V179 -C188 -0.0725397898681379 G155 -G161 -0.0759501944764676 F168 -I184 -0.0829508573271376 W143 -A148 -0.0851760815831515 S77 -R82 -0.086216595110695 N147 -V156 -0.0864802927158435 F168 -M181 -0.0878153247584628 M181 -C189 -0.0900158707925764 L164 -F171 -0.0909000319905827 G157 -P162 -0.093011116711335 V183 -C188 -0.093171609976352 L149 -G157 -0.0946151798277146 L66 -T73 -0.0980070670655646 M153 -G161 -0.0984115293184775 A68 -S77 -0.10058768797776 T144 -N158 -0.102883630398936 M69 -G165 -0.103676470905976 F178 -A185 -0.105113742972185 P162 -A169 -0.105961288387329 A169 -L176 -0.106815753896266 F168 -A182 -0.107355506495727 G161 -F168 -0.107398836143972 S151 -G157 -0.108721342563695 F159 -G165 -0.109044348689514 F178 -A187 -0.109304414218327 L149 -V160 -0.110787290968474 G165 -I184 -0.110816107347203 Y154 -A163 -0.112992152307196 L164 -A169 -0.114397762678612 Y154 -P162 -0.114443035756876 W174 -A180 -0.119065002617558 F168 -V183 -0.120633585425812 A72 -S77 -0.121349405044337 P162 -L167 -0.122017463822101 V160 -G166 -0.122214254393902 G172 -F178 -0.123365975311835 A182 -C188 -0.126240897256928 G166 -G172 -0.126358341035072 V179 -A185 -0.126963640662913 M150 -F159 -0.127828821169667 T73 -A81 -0.129468592882988 G166 -F178 -0.130257218354365 T144 -Y154 -0.133400997023966 L75 -R82 -0.135234716142367 V179 -A186 -0.135455681516111 A169 -W174 -0.135513240532849 L164 -A177 -0.139548643169461 M150 -N158 -0.141913813495465 F168 -L176 -0.143335264421198 A152 -N158 -0.143657383704873 G165 -F171 -0.144447768340201 L142 -N147 -0.147804165362971 G172 -V179 -0.148637339013654 M150 -V160 -0.149418623904851 G161 -L167 -0.149986910041373 F168 -A180 -0.150752928793468 N147 -A152 -0.150894212603003 N147 -M153 -0.151080849347876 G146 -S151 -0.152708792563716 L176 -I184 -0.153410873083602 R175 -A185 -0.15527248884294 G166 -F171 -0.156353043257155 L167 -A180 -0.156791286869667 Y154 -G161 -0.157993347737984 S173 -M181 -0.159905257165542 N158 -L164 -0.160705833352394 L176 -V183 -0.162595411827764 R175 -I184 -0.163594517844783 W143 -M150 -0.167399150249076 S151 -F159 -0.171306790593308 S173 -V179 -0.174243071393256 A180 -A186 -0.175123125327135 T73 -R78 -0.17516614280583 R175 -M181 -0.175398673081579 S151 -N158 -0.175579371971965 V156 -G161 -0.177417618205251 V156 -P162 -0.179640267006976 P162 -F168 -0.192416108830317 A152 -F159 -0.195179250732446 G157 -A163 -0.199225848694056 A169 -M181 -0.202141444964845 N158 -G166 -0.20363722865403 F168 -W174 -0.203741875292759 R175 -A182 -0.206366944324633 W174 -V183 -0.210414377613831 A163 -A169 -0.215041157375477 A72 -R78 -0.216515490810872 T73 -L79 -0.216857867075975 F178 -I184 -0.219455557286487 N158 -A163 -0.221208939309183 V67 -T73 -0.221706756299007 S173 -A180 -0.227728392321112 V156 -L164 -0.229601971493538 M69 -V76 -0.237537422287682 G161 -G166 -0.239848582651598 W174 -M181 -0.240229634832197 Y65 -V70 -0.240610624986338 M181 -A186 -0.244054315391338 Y65 -I71 -0.245273777161224 F168 -F178 -0.246617632194216 A148 -G155 -0.249417357351395 A163 -F168 -0.253667364211404 V160 -L167 -0.254151495131241 L149 -N158 -0.254757781999976 L66 -A72 -0.258467795340778 A68 -L75 -0.261188471648266 L176 -M181 -0.263875377652562 F171 -F178 -0.264514144834947 A169 -F178 -0.267801698458298 M69 -M74 -0.274713247254614 F178 -V183 -0.277154542574815 L176 -A182 -0.278201061855455 M153 -V160 -0.28076837504904 M69 -L75 -0.280789714558252 T73 -L80 -0.28333764753719 F171 -L176 -0.284090652920293 M181 -A187 -0.291049512492902 Y154 -V160 -0.295611621703159 M74 -L80 -0.303619551693945 I71 -S77 -0.308095791992979 V70 -S77 -0.308810466264663 A177 -V183 -0.311283805565576 M150 -V156 -0.311755559023537 F168 -A177 -0.312832835677204 A148 -Y154 -0.317215494722972 V70 -L75 -0.323733015044247 V70 -V76 -0.331606841954444 A177 -A182 -0.338131347352008 A68 -M74 -0.355458998478532 A68 -T73 -0.36265389897567 I64 -M69 -0.400977123300196 A182 -A187 -0.403150138204858 A169 -A177 -0.403865900090801 A180 -A185 -0.404756559879234 I71 -V76 -0.440468021184103 M74 -L79 -0.456419271281063 V67 -A72 -0.46644797757969 V179 -I184 -0.481197454141887 V183 -C189 -0.505583837869084 I184 -C189 -0.682601741768369