[Mon Aug 29 17:18:57 2016] >Input file: TMD2F019M1G.pdb >TM segments: 585-597_ 624-655 MAIDEN score = 11.4551 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I642 -P648 10 V595 -S624 3.51640086455723 L641 -P648 1.79528629588431 V640 -S652 1.45507030533295 I642 -L649 1.10832743503888 I642 -K651 0.680159235901996 F638 -S654 0.661243744331751 L641 -L649 0.652992766527727 A633 -F638 0.600657194719975 F638 -Y653 0.584822425009708 V595 -Q627 0.574455702831651 L641 -N650 0.564528749854972 L593 -S624 0.543423151066868 F638 -S652 0.503839396928238 A633 -S654 0.466206859079259 F638 -Y655 0.460262986910208 A635 -S654 0.454575562424717 V595 -Y625 0.447091740246632 V640 -Y653 0.43915728707579 Q627 -K647 0.435315132047148 F631 -S652 0.431062968189289 L641 -Y653 0.402284468814013 L641 -S652 0.396868012512345 V640 -N650 0.392334791414209 V640 -P648 0.386283593693898 Q627 -G632 0.357782933725308 A633 -K651 0.353120360211762 Y625 -K630 0.33229695012484 Y588 -D643 0.322081490050909 Q636 -Y655 0.302843677348924 K630 -S654 0.289293434493922 L641 -K647 0.28642771722546 R628 -Y653 0.273293181970036 Y594 -V629 0.261985530801119 Q627 -Y653 0.259436278392736 S624 -A633 0.257480881511232 L626 -F631 0.255206660679285 Y588 -P648 0.254116755155107 T592 -Q627 0.246561672009984 Y625 -Q636 0.234383226518567 I642 -N650 0.231408181432871 V589 -Y639 0.224840439889403 Q627 -P637 0.224789693061402 F631 -Y655 0.220187069551872 Y639 -K651 0.21080594721706 Y594 -F631 0.205132074554995 Q627 -P648 0.202677318837409 V595 -F631 0.202438373090619 V640 -K651 0.201775962448082 D596 -V629 0.195069258578869 P637 -S654 0.191929407698411 Q627 -G646 0.18252861458054 N597 -L626 0.168651961281849 Y588 -N650 0.163543019422695 A635 -Y655 0.161566852934088 A635 -S652 0.160379003992926 L593 -P637 0.159649090712826 F631 -N650 0.156444946080436 N586 -D643 0.155071034538164 D596 -N634 0.155056692844537 F638 -N650 0.154907153713299 N585 -D643 0.154824492609104 Y588 -G646 0.154713087239858 F631 -F638 0.152270279424446 Y588 -Y639 0.151579906727362 Y588 -L649 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