[Mon Aug 29 17:26:20 2016] >Input file: TMD3HWC6M3G.pdb >TM segments: 611-621_ 655-680 MAIDEN score = 5.7147 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V664 -A676 1.80057120179803 V666 -P672 1.47763287765386 F662 -K680 1.13522655611551 F662 -S678 0.855373561796923 V666 -T674 0.701842676165505 V666 -L673 0.697027504696209 A659 -Y679 0.667446959970612 A665 -L673 0.659560213863199 F662 -A676 0.606825597588604 F662 -Y677 0.579228871498108 F655 -A676 0.567131926288026 A657 -F662 0.561573073181676 F662 -Y679 0.51247787485074 Y663 -K680 0.385909593791177 A657 -S678 0.345962980342352 A665 -G675 0.338313212260115 A665 -S678 0.322343469416991 A665 -A676 0.294008939579198 G656 -Y663 0.293839123510477 V664 -Y677 0.286430403929034 V664 -T674 0.281760244879615 Y612 -P672 0.281121322474797 D667 -T674 0.269448298573684 Q660 -Y679 0.257048717225646 A659 -S678 0.247108710606547 A657 -K680 0.243934441516362 F662 -G675 0.237688617401496 S668 -L673 0.221244368914627 F655 -A665 0.214000548955898 G670 -G675 0.211848408656119 V664 -G670 0.205625841867059 V666 -N671 0.192630197195427 F655 -Y679 0.188863403436394 Y612 -D667 0.188784803534182 N658 -Y663 0.185322312614534 G656 -Y679 0.181908846449728 Y612 -G670 0.18059717701696 D669 -T674 0.180114249153522 L614 -S668 0.178963956323269 D667 -G675 0.178918741496628 P661 -S678 0.177991006589763 V664 -P672 0.177418001626423 D620 -P661 0.165983948783793 D611 -A665 0.164873237535792 G656 -A665 0.163226445757794 V664 -G675 0.152877460921963 V613 -Y663 0.145884365109054 F655 -Q660 0.142819168284256 A659 -A676 0.139515500836994 Y612 -L673 0.136162097872981 G656 -P672 0.133176606747591 S616 -V666 0.123995239146772 F618 -Q660 0.120055389383911 G656 -G675 0.119406614122578 P661 -A676 0.116472091763765 V664 -L673 0.113267361364096 Y663 -L673 0.112722197993036 L614 -D667 0.103669590174481 F655 -G670 0.102261676138422 A657 -G675 0.10072757494265 I615 -G670 0.0996139258534947 Y663 -A676 0.0977535178382429 S616 -D621 0.09333606276462 L617 -A665 0.089823931110244 S616 -P661 0.0875724776290827 L617 -Y663 0.0863140454849356 L617 -V664 0.0855739218334739 N658 -Y677 0.0817219360050805 V613 -G670 0.0793699494058071 Y612 -V664 0.0756901614035597 A659 -V664 0.0741795840039243 D621 -Q660 0.0669290772168604 N658 -A676 0.066698949605084 D621 -F662 0.0635955804191117 I615 -A676 0.0633210837257265 G656 -N671 0.0632145500275663 F662 -T674 0.06012221891244 I615 -S668 0.0580672369023996 Q660 -Y677 0.05439945620564 F655 -N671 0.0532923307184642 V664 -S678 0.0532224186718544 D611 -S668 0.0507346939947049 V664 -D669 0.0462396234804636 V666 -Y677 0.0442868499992173 S668 -T674 0.0391514015830317 V664 -K680 0.0345037731296439 S616 -Q660 0.0252402457196683 D620 -A657 0.0247304045613639 L617 -V666 0.0246121651953102 Y612 -N671 0.0234599451398574 G670 -A676 0.0232439937874656 F655 -T674 0.0229021833142183 D620 -N658 0.0182902251689319 Y663 -Y679 0.0180178062507617 D620 -A659 0.0168231024096142 V613 -L673 0.0154185046081334 L614 -V619 0.0137465329460285 Y663 -G670 0.0123490406164377 S616 -A665 0.0116473668304 F655 -L673 0.00985658049548643 A657 -A665 0.00928422455431654 N658 -V664 0.00670123421142166 V613 -D669 0.00574263359848537 D620 -G656 0.00245414827493923 L614 -F662 0.00196376330719872 P661 -K680 0.000998484946644895 L614 -T674 0.000119293657125263 D621 -F655 -0.000646530499063047 F618 -P661 -0.00104600824652035 D667 -A676 -0.00110080492617382 L614 -P672 -0.00139946696273086 V666 -A676 -0.00193234483489091 V619 -Q660 -0.00846791152883508 S668 -G675 -0.00980156285824618 F655 -V666 -0.0105760832156392 N671 -Y677 -0.012358015564673 D621 -A659 -0.0124329160008561 L617 -F662 -0.0137263279121367 G675 -K680 -0.0157496540221831 F655 -F662 -0.01667740188969 Y612 -G675 -0.0216979015470118 I615 -D621 -0.0339712222963469 L614 -P661 -0.0345363204043903 Y663 -N671 -0.0371750264051731 D621 -G656 -0.043133983040339 D620 -Q660 -0.0447795761004681 L617 -Q660 -0.0448637200966928 G656 -Y677 -0.0487840810007585 A657 -P672 -0.0494629149394425 A665 -T674 -0.0517388548995856 D621 -P661 -0.0532878689646413 Q660 -A676 -0.0546224777353101 L617 -P661 -0.0562845859393877 I615 -F662 -0.0600010812504291 A665 -Y679 -0.060878850289555 F662 -P672 -0.0628300002985593 F655 -S678 -0.065180476506471 D620 -F655 -0.0658065286880909 D611 -V664 -0.0668188414288791 I615 -D667 -0.0673234082863683 V613 -T674 -0.0677553642181739 G656 -V664 -0.0687241332483053 N671 -A676 -0.0692773290076474 G656 -P661 -0.0694381321616558 V666 -S678 -0.0705164255213315 V613 -P672 -0.0722810617032832 G656 -A676 -0.0740506181081658 P661 -G675 -0.0758442641755797 D621 -A657 -0.0798458660176907 D669 -G675 -0.0799050614438794 P661 -Y677 -0.0823470353407501 N658 -K680 -0.0832584687504938 A659 -Y677 -0.0854082192497531 A657 -Y663 -0.0866765776799424 D621 -N658 -0.0914894839325284 A657 -Y679 -0.096213225169073 D611 -V666 -0.102397667249564 G656 -F662 -0.103782458489167 Q660 -S678 -0.106149601238539 L614 -G670 -0.106299008177478 V613 -V664 -0.107214345198908 L614 -Y663 -0.107380633079322 F655 -G675 -0.107650693234217 Q660 -K680 -0.107746159953699 I615 -N671 -0.108138786616958 V613 -N671 -0.108388632216576 A665 -K680 -0.110041019963597 A665 -N671 -0.112468447210258 S616 -Y663 -0.114773092068351 A665 -P672 -0.116756883619529 A659 -K680 -0.117500832047185 I615 -P661 -0.118829491645484 Y663 -G675 -0.119802582713047 D611 -T674 -0.122134725017221 Y663 -P672 -0.127820146351496 V664 -Y679 -0.128295373407754 P672 -Y677 -0.128341555686848 I615 -P672 -0.1298285113964 Y612 -Y663 -0.129833351177956 Y612 -T674 -0.130789727144709 Y663 -T674 -0.136528992460823 F655 -D667 -0.137542094791862 D667 -L673 -0.140802599717517 I615 -Y663 -0.14224588049401 Y612 -D669 -0.143769602033084 F655 -P661 -0.14452184114996 G656 -S678 -0.152925030918012 I615 -D620 -0.15459414367186 S616 -F662 -0.15700237008698 L614 -Y677 -0.157245568199737 D620 -F662 -0.158295164783644 F655 -Y677 -0.159957984126036 A657 -A676 -0.165427109531643 A665 -Y677 -0.169178879988426 D611 -D667 -0.169453039425834 P672 -S678 -0.172649389817505 A657 -V664 -0.178081706925407 D611 -L673 -0.178428677408779 F655 -Y663 -0.178653721282991 N658 -S678 -0.186325054600396 L614 -A665 -0.186400486907482 Y612 -V666 -0.188347098569299 V613 -D667 -0.193544909776957 I615 -V666 -0.195336307825843 S616 -V664 -0.196334727934472 A665 -G670 -0.202320485660146 D620 -Y663 -0.210516688863499 D667 -P672 -0.212195931270934 A657 -Y677 -0.216225486335212 D620 -V664 -0.224936912645952 D667 -Y677 -0.228942150141787 F655 -P672 -0.238416233307985 L614 -V664 -0.242392143336284 V666 -G675 -0.24521139558944 P661 -Y679 -0.250701611718633 V613 -S668 -0.251558480319621 L614 -V666 -0.28323806565047 I615 -A665 -0.284230049207651 I615 -V664 -0.284240054754227 D611 -Y663 -0.287084759631008 Y612 -S668 -0.308967204978914 Y612 -A665 -0.328579102877989 V664 -N671 -0.330354339944089 F655 -V664 -0.330558249375583 V613 -V666 -0.331740447531212 V613 -A665 -0.367385404104005 N658 -Y679 -0.420046734315867 Y663 -Y677 -0.519865020159135 Y663 -S678 -0.571989228906127