[Fri Aug 26 17:21:57 2016] >Input file: TMD3IJ69M1D.pdb >TM segments: 590-599 MAIDEN score = -0.0742 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- Y590 -Y596 0.186543161205266 V591 -Y596 0.0241534392399565 V591 -V597 0.0217621945005129 L592 -V597 -0.0633876528235069 Y590 -L595 -0.243285955747711