[Mon Aug 29 17:27:18 2016] >Input file: TMD3MT33M1G.pdb >TM segments: 459-474 MAIDEN score = -1.7832 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- E466 -K472 0.390702179535694 K459 -E465 0.196910325443898 L460 -E466 0.184682836710608 E466 -A474 0.184424634104223 E466 -A471 0.165397597443895 L460 -K468 0.123043382140612 S463 -A471 0.116433561936676 E465 -A470 0.0897764871695821 A462 -A470 0.0815616803115229 S463 -K472 0.0795598231854413 D464 -K472 0.0695644685513841 E465 -K472 0.0483573136398752 K459 -V467 0.0347391357942423 D464 -S473 0.0208715820454974 K459 -E466 0.018571699280125 D461 -E466 0.00937361450792018 K468 -A474 -0.0192004760059823 E466 -S473 -0.0236559805681775 A462 -K468 -0.0237593865755095 R469 -A474 -0.0331842984804751 A462 -A471 -0.0350135200566162 D464 -A471 -0.0368651047734341 E465 -A474 -0.0406806825801769 V467 -K472 -0.0482321416781026 S463 -K468 -0.0515611351653047 D461 -R469 -0.0566312143941936 L460 -R469 -0.0789002667815932 L460 -E465 -0.0866373566362375 S463 -R469 -0.0889371581551872 E465 -S473 -0.0909508820214575 E465 -A471 -0.09916088119477 D461 -V467 -0.111818152217213 K459 -D464 -0.112867824164142 D461 -K468 -0.136691435423482 D461 -A470 -0.148698226696697 D464 -A470 -0.155586277540304 D464 -R469 -0.160307490976746 L460 -V467 -0.164465946340508 K468 -S473 -0.170032440896609 V467 -A474 -0.170683677745743 S463 -A470 -0.197750101595118 K459 -K468 -0.215721974864041 A462 -R469 -0.252116563095455 V467 -S473 -0.333415889950535 A462 -V467 -0.453635309841725