[Fri Aug 26 17:29:14 2016] >Input file: TMD3YZU3S2D.pdb >TM segments: A102-108_A111-116 MAIDEN score = -0.8166 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- P107A-V112A 1.22051617162148 F105A-V112A 0.710565470815023 N104A-V116A 0.655369312255261 V103A-V116A 0.633789276646039 V102A-V116A 0.503301442568036 V103A-A114A 0.385868373691375 V103A-V112A 0.164086468080781 S108A-D115A 0.117318908125593 R106A-K113A 0.112069055162515 V103A-D115A 0.065424656694816 R106A-V116A 0.0462424705182656 R106A-G111A 0.0201299409454783 N104A-K113A 0.0167953169404278 P107A-D115A 0.00888791133951639 R106A-D115A -0.0245714797658287 V102A-A114A -0.0400887647642814 F105A-A114A -0.0466526864504664 P107A-K113A -0.0626189096952633 P107A-V116A -0.0740535674348824 V102A-P107A -0.0758851914451975 V102A-V112A -0.0935864015559067 F105A-G111A -0.108121599487495 V103A-K113A -0.16083566683865 S108A-K113A -0.202405530409396 N104A-V112A -0.202932002623525 S108A-A114A -0.206666895185184 N104A-G111A -0.226606338389595 V102A-K113A -0.227778019985295 N104A-A114A -0.237101567090855 V102A-D115A -0.298500593486218 P107A-A114A -0.305005829859772 F105A-V116A -0.307079006712036 F105A-K113A -0.338006216637446 R106A-A114A -0.34712054522486 F105A-D115A -0.502174193252066 N104A-D115A -0.642492779272217 R106A-V112A -0.746700224125021