[Fri Aug 26 17:29:24 2016] >Input file: TMD3Z9X4M1D.pdb >TM segments: 297-313 MAIDEN score = 0.1240 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L298 -R305 0.397664385202449 F300 -R305 0.31613971644735 F300 -P306 0.278844159970367 T299 -V304 0.209097481064925 L298 -I307 0.121062705321908 L298 -S303 0.114155902300331 T299 -P306 0.0981523470071259 P297 -R305 0.0877681688763703 T299 -I307 0.0859618865843732 G302 -I307 0.0156485062906389 F300 -I307 0.00247985522777805 T299 -R305 -0.00669899485356051 F300 -C308 -0.0114220159432641 S301 -I307 -0.0671713774570133 P297 -V304 -0.0745307702848231 L298 -V304 -0.155576782938262 P297 -P306 -0.233560795195902 S301 -P306 -0.241634388542181 C308 -D313 -0.2445816656743 L298 -P306 -0.567748966225641